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    This document summarizes the alignment of two protein domains: 1) The domains have 110 identical residues and 100% sequence overlap. 2) The sequence identity between the domains is 100%. 3) The RMSD between the domains is 0.525 Angstroms.

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    This document summarizes the alignment of two protein domains: 1) The domains have 110 identical residues and 100% sequence overlap. 2) The sequence identity between the domains is 100%. 3) The RMSD between the domains is 0.525 Angstroms.

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    Attribution Non-Commercial (BY-NC)
    Descărcați ca PDF, TXT sau citiți online pe Scribd
    Indicator pentru conținut neadecvat
    22 vizualizări2 pagini

    Ssap

    Încărcat de

    api-3807637
    This document summarizes the alignment of two protein domains: 1) The domains have 110 identical residues and 100% sequence overlap. 2) The sequence identity between the domains is 100%. 3) The RMSD between the domains is 0.525 Angstroms.

    Drepturi de autor:

    Attribution Non-Commercial (BY-NC)
    Descărcați ca PDF, TXT sau citiți online pe Scribd
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    din 2

    Equiv. Overlap Seq.

    id Score (0-
    Domain1 Length Domain2 Length RMSD
    Res. (%) (%) 100)
    1rk9A0 110 1rjvA0 110 110 100 100 97.38 0.525

    Launch Rasmol View /Save superposed PDB View /Save raw SSAP alignment

    Alignment (readable)
    1rk9A0:pdbno 1 11 21 31
    1rk9A0 | | | |
    1rk9A0:aa MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKS
    1rk9A0:ss HHHHHHHHHHH HHHHHHH

    1rjvA0:pdbno 1 11 21 31
    1rjvA0 | | | |
    1rjvA0:aa MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKS
    1rjvA0:ss HHHHHHHHHH HHHHHHH

    1rk9A0:pdbno 41 51 61 71
    1rk9A0 | | | |
    1rk9A0:aa ADDVKKVFHMLDKDKSGFIEEDELGFILKGFSPDARDLSA
    1rk9A0:ss HHHHHHHHHHH HHHH HHHH H

    1rjvA0:pdbno 41 51 61 71
    1rjvA0 | | | |
    1rjvA0:aa ADDVKKVFHMLDKDKSGFIEEDELGFILKGFSPDARDLSA
    1rjvA0:ss HHHHHHHHHHH HHHH HHHH H

    1rk9A0:pdbno 81 91 101
    1rk9A0 | | |
    1rk9A0:aa KETKMLMAAGDKDGDGKIGVDEFSTLVAES
    1rk9A0:ss HHHHHHHHH HHHHHHHHHH

    1rjvA0:pdbno 81 91 101
    1rjvA0 | | |
    1rjvA0:aa KETKMLMAAGDKDGDGKIGVDEFSTLVAES
    1rjvA0:ss HHHHHHHHHH HHHHHH

    View /Save readable alignment


    Alignment in FASTA format
    > 1rk9A0
    MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKS
    ADDVKKVFHMLDKDKSGFIEEDELGFILKGFSPDARDLSA
    KETKMLMAAGDKDGDGKIGVDEFSTLVAES
    > 1rjvA0
    MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKS
    ADDVKKVFHMLDKDKSGFIEEDELGFILKGFSPDARDLSA
    KETKMLMAAGDKDGDGKIGVDEFSTLVAES
    View /Save Fasta alignment

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