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Cre-Lox recombination
Cre-Lox recombination is a site-specific recombinase technology widely used to carry out deletions, insertions, translocations and inversions in the DNA of cells. It allows the DNA modification to be targeted to a specific cell type or be triggered by a specific external stimulus. It is implemented both in eukaryotic and prokaryotic systems. The system consists of a single enzyme, Cre recombinase that recombines a pair of short target sequences called the Lox sequences. This system can be implemented without inserting any extra supporting proteins or sequences. The Cre enzyme and the original Lox site called the LoxP sequence are derived from a bacteriophage P1. Placing Lox sequences appropriately will allow genes to be activated, repressed, or exchanged for other genes. At a DNA level many types of manipulations can be carried out. The activity of the Cre enzyme can be controlled so that it is expressed in a particular cell type or triggered by an external stimulus like a chemical signal or a heat shock. These targeted DNA changes are useful in cell lineage tracing and when mutants are lethal if expressed globally. The Cre-Lox system is very similar in action and in usage to the FLP-FRT recombination system.[1]
History
Cre-Lox recombination is a special type of site-specific recombination developed by Dr. Brian Sauer initially for use in activating gene expression in mammalian cell lines and transgenic mice (DuPont).[2][3] Subsequently, the laboratory of Dr. Jamey Marth showed that Cre-Lox recombination could be used to delete loxP-flanked chromosomal DNA sequences at high efficiency in selected cell types of transgenic animals, suggesting this approach as a means to define gene function in specific cell types, indelibly mark progenitors in cell fate determination studies, induce specific chromosomal rearrangements for biological and disease modeling, and determine the roles of early genetic lesions in disease (and phenotype) maintenance.[4] Shortly thereafter, the laboratory of Dr. Klaus Rajewsky reported the production of pluripotent embryonic stem cells bearing a targeted loxP-flanked (floxed) DNA polymerase gene.[5] Combining these advances in collaboration, the laboratories of Drs. Marth and Rajewsky showed in 1994 that Cre-lox recombination could be used for conditional gene targeting in vivo.[6] This technique continues to be used by hundreds of researchers and laboratories around the world as an essential procedure to discover gene function in normal and disease biology, resulting in numerous important discoveries that would otherwise have not been possible. In 2009, Germany awarded the Max Delbrck medal to Dr. Klaus Rajewsky for his role in developing Cre-Lox recombination. Cre-Lox recombination involves the targeting of a specific sequence of DNA and splicing it with the help of an enzyme called Cre recombinase. Because systemic inactivation of many genes further cause embryonic lethality, Cre-Lox recombination is commonly used to circumvent this problem. In addition, CreLox recombination provides the best experimental control that presently exists in transgenic animal modeling to link genotypes (alterations in genomic DNA) to the biological outcomes (phenotypes).
Overview
The Cre-lox system is used as a genetic tool to control site specific recombination events in genomic DNA. This system has allowed researchers to manipulate a variety of genetically modified organisms to control gene expression, delete undesired DNA sequences and modify chromosome architecture. The Cre protein is a site-specific DNA recombinase, that is, it can catalyse the recombination of DNA between specific sites in a DNA molecule. These sites, known as loxP sequences, contain specific binding sites for Cre that surround a directional core sequence where recombination can occur. When cells that have loxP sites in their genome express Cre, a recombination event can occur between the loxP sites. The double stranded DNA is cut at both loxP sites by the Cre protein. The strands are then rejoined with DNA ligase in a quick and efficient process. The result of recombination depends on the orientation of the loxP sites. For two lox
Cre-Lox recombination sites on the same chromosome arm, inverted loxP sites will cause an inversion of the intervening DNA, while a direct repeat of loxP sites will cause a deletion event. If loxP sites are on different chromosomes it is possible for translocation events to be catalysed by Cre induced recombination.
Cre recombinase
The Cre protein (encoded by the locus originally named as "Causes recombination", with "Cyclization recombinase" being found in some references) [7][8] consists of 4 subunits and two domains: The larger carboxyl (C-terminal) domain, and smaller amino (N-terminal) domain. The total protein has 343 amino acids. The C domain is similar in structure to the domain in the Integrase family of enzymes isolated from lambda phage. This is also the catalytic site of the enzyme.
Lox P site
Lox P (locus of X-over P1) is a site on the Bacteriophage P1 consisting of 34 bp. There exists an asymmetric 8 bp sequence in between with two sets of palindromic, 13 bp sequences flanking it. The detailed structure is given below.
13bp 8bp 13bp
Cre-Lox recombination
Site-specific recombination
Site-specific recombination (SSR) involves specific sites for the catalysing action of special enzymes called recombinases. Cre, or cyclic recombinase, is one such enzyme. Site-specific recombination is, thus, the enzyme-mediated cleavage and ligation of two defined deoxynucleotide sequences. A number of conservative site-specific recombination systems have been described in both prokaryotic and eukaryotic organisms. In general, these systems use one or more proteins and act on unique asymmetric DNA sequences. The products of the recombination event depend on the relative orientation of these asymmetric sequences. Many other proteins apart from the Recombinase are involved in regulating the reaction. During site-specific DNA recombination, which brings about genetic rearrangement in processes such as viral integration and excision and chromosomal segregation, these recombinase enzymes recognize specific DNA sequences and catalyse the reciprocal exchange of DNA strands between these sites. Mechanism of action Initiation of site-specific recombination begins with the binding of recombination proteins to their respective DNA targets. A separate recombinase recognizes and binds to each of two recombination sites on two different DNA molecules or within the same DNA. At the given specific site on the DNA, the hydroxyl group of the tyrosine attacks a phosphate group in the DNA using a direct transesterification mechanism linking the recombinase protein to the DNA via a phospho-tyrosine linkage. This conserves the energy of the A model experiment in genetics using the Cre-lox system phosphodiester bond, allowing the reaction to be reversed without the involvement of a high-energy cofactor. Cleavage on the other strand also causes a phospho-tyrosine bond between DNA and the enzyme. At both the DNA duplexes, the bonding of the phosphate group to tyrosine residues leave a 3 OH group free. In fact, the enzyme-DNA complex is an intermediate stage, which is followed by the ligation of the 3 OH group of one DNA strand to the 5 phosphate group of the other DNA strand, which is covalently bonded to the tyrosine residue; that is, the covalent linkage between 5 end and tyrosine residue is broken. This reaction synthesizes the Holliday Junction discussed earlier. In this fashion, opposite DNA strands are joined together. Subsequent cleavage and rejoining cause DNA strands to exchange their segments. Protein-Protein interactions drive and direct strand exchange. Energy is not compromised, since the Protein-DNA linkage makes up for the loss of the Phosphodiester bond, which occurred during cleavage. Site-specific Recombination is also an important process that viruses, such as bacteriophages, adopt to integrate their genetic material into the infected host. The virus, called a prophage in such a state, accomplishes this via integration and excision. The points where the integration and excision reactions occur are called the attachment (att) sites. An attP site on the Phage exchanges segments with an attB site on the Bacterial DNA. Thus, these are site-specific, occurring only at the respective att sites. The integrase class of enzymes catalyse this particular reaction.
Cre-Lox recombination
References
[1] Turan, S.; Galla, M.; Ernst, E.; Qiao, J.; Voelkel, C.; Schiedlmeier, B.; Zehe, C.; Bode, J. (2011). "Recombinase-mediated cassette exchange (RMCE): traditional concepts and current challenges". J. Mol. Biol. 407 (2): 193-221. doi:10.1016/j.jmb.2011.01.004. [2] Sauer, B. (1987). "Functional expression of the Cre-Lox site-specific recombination system in the yeast Saccharomyces cerevisiae". Mol Cell Biol 7: 20872096. [3] Sauer, B.; Henderson, N. (1988). "Site-specific DNA recombination in mammalian cells by the Cre recombinase of bacteriophage P1". Proc. Natl. Acad. Sci. USA 85: 51665170. [4] Orban, P.C., Chui, D., and Marth, J.D. (1992) "Tissue and sitespecific recombination in transgenic mice." "Proc. Natl. Acad. Sci. USA" "89": 68616865 [5] Gu, H., Zou, Y.R., and Rajewsky, K. (1993) "Independent control of immunoglobulin switch recombination at individual switch regions evidenced through CreloxPmediated gene targeting." "Cell" "73": 1155-1564 [6] Gu, H., Marth, J.D., Orban, P.C., Mossman, H., and Rajewsky, K. (1994) "Deletion of the DNA polymerase beta gene in T cells using tissue-specific gene targeting. "Science" "265": 103-106. [7] http:/ / www. ncbi. nlm. nih. gov/ protein/ AAV84941. 1 [8] Sternberg and Hamilton, J.Mol.Biol. (1981) 150, 467-486, pp 468 [9] obocka, Magorzata B.; Debra J. Rose, Guy Plunkett, Marek Rusin, Arkadiusz Samojedny, Hansjrg Lehnherr, Michael B. Yarmolinsky, Frederick R. Blattner (2004-11). "Genome of Bacteriophage P1" (http:/ / jb. asm. org/ content/ 186/ 21/ 7032). Journal of Bacteriology 186 (21): 70327068. doi:10.1128/JB.186.21.7032-7068.2004. ISSN0021-9193. PMC523184. PMID15489417. . [10] Sternberg, N; R Hoess (1983). "The Molecular Genetics of Bacteriophage P1" (http:/ / www. annualreviews. org/ doi/ abs/ 10. 1146/ annurev. ge. 17. 120183. 001011). Annual Review of Genetics 17 (1): 123154. doi:10.1146/annurev.ge.17.120183.001011. . Retrieved 2012-03-26. [11] Editor's Summary (1 November 2007) Over the brainbow (http:/ / www. nature. com/ nature/ journal/ v450/ n7166/ edsumm/ e071101-01. html). Nature. Accessed 15 March 2010.
Cre-Lox recombination
External links
Introduction to Cre-lox technology by the "Jackson Laboratory" (http://cre.jax.org/introduction.html)
License
Creative Commons Attribution-Share Alike 3.0 Unported //creativecommons.org/licenses/by-sa/3.0/