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Annals of Botany Volume 112 Number 3 2013 Species coherence in a cytogenetically diverse sedge
doi:10.1093/aob/mct119 The sedge genus Carex, the most diversied angiosperm genus of the northern temperate zone, is known for its holocentric chromosomes and karyotype variability. Escudero et al. ( pp. 515526) provide the rst comprehensive study of population-level patterns of molecular and cytogenetic differentiation in the genus. They demonstrate dispersal and genetic connectivity among populations of the North American Carex scoparia that differ in chromosome numbers, demonstrating that cytogenetically variable sedge species can still cohere genetically. This nding is important to our understanding of what constitutes a species in one of the worlds largest angiosperm genera.
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Recent research on the history of Platanus has shown that complex hybridization phenomena occurred in the central American species, and its evolutionary history remains unresolved. De Castro et al. ( pp. 589602) employ sequencing of a uniparental cpDNA marker ( psbA-trnH (GUG) intergenic spacer) and qualitative and quantitative SNP genotyping of biparental nrDNA markers (LFY-i2 and ITS2) to conrm that hybridization and introgression events between lineages ancestral to modern central and eastern North American Platanus species occurred. Chloroplast haplotypes and qualitative and quantitative SNP genotyping provide information critical for understanding the complex history of Mexican Platanus. Compared with the usual molecular techniques of sub-cloning, sequencing and genotyping, the real-time PCR assay employed provides a quick and sensitive technique for analysing complex evolutionary patterns.
Individual variation in mating patterns may have signicant implications for persistence and adaptation of plant populations, but eld data generally focus on population averages. Using a Bayesian approach, Chybicki and Burczyk ( pp. 561 574) examine the extent of individual variation of several components of mating patterns in a mixed stand of Quercus robur and Q. petraea. They nd that there is a great variation in intra- and inter-specic individual mating preferences, individual pollen immigration rates and heterogeneity of immigrating pollen. They show that trees can mate assortatively, with little respect to spatial proximity. Such selective mating may be a result of variable compatibility among trees due to genetic and/or environmental factors.
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MicroRNAs (miRNAs) play an important role in adaptation of plants to many stresses including low nitrogen availability. Zhao et al. ( pp. 633 642) identify miRNAs and their targets in maize (Zea mays) subjected to low-nitrogen stress by combined analysis of deep sequencing of small RNA and degradome libraries. Of 85 potentially new miRNAs, 25 show a more than two-fold relative change in response to low-nitrogen compared to optimal conditions, and two novel putative miR169 species are identied. The results will help increase understanding of the physiological basis for low-nitrogen tolerance and adaptation in maize.
Plant Cuttings
Plant Cuttings has changed . . .
Were experimenting with a new format for the Plant Cuttings this month. Whilst applauding the eclectic mix of content each issue, some readers of this column have expressed concern that inclusion of the full citations within the text spoils their enjoyment of the news items because this hinders the narrative ow. So, balancing the need to provide evidence-based science communication and readability, for this issue, in-text references are replaced with numbers, and fuller citation(s) appear below the news item. What do you think? Is this better? Do let me know either on Twitter: @NChaffey, or via e-mail: n.chaffey@bathspa.ac.uk. Thank you.
Image: Wikimedia Commons.
News in Botany: Nigel Chaffey presents a round-up of plant-based items from the worlds media
Pacheco-Villalobos et al. reveal that interactions between the plant hormones[5,6] ethylene and auxin in roots of the monocot Brachypodium distachyon (another model plant [7,8]) differ to those in roots of the dicot Arabidopsis [9]. Wheras lowered levels of auxin in Arabidopsis, which can be caused by increases in another hormone ethylene result in shorter roots, in Brachypodium increases in ethylene lead to elevated levels of auxin and longer roots(!). The latters inverted regulatory relation between the two hormones points to a complex homeostatic crosstalk between auxin and ethylene in Brachypodium roots, which is fundamentally different from Arabidopsis and might be conserved in other monocotyledons. So, and as those scientists sagely state, Observations gained from model organisms are essential, yet it remains unclear to which degree they are applicable to distant relatives. And, further complicating the ethylene story if such was needed at this stage Scientists identify thousands of plant genes activated by ethylene gas[10]. Examining transcriptional response to ethylene, Katherine Chang et al. have shown that this gaseous plant hormone is involved in an extensive network of cross-regulation with many other plant hormones centred around EIN3, a transcription factor that acts as the master regulator of the ethylene signalling pathway[11]. Although this work was performed in arabidopsis, EIN3 orthologs[12,13] exist in many other plants, so this study is anticipated to have broader relevance to . . . poplar, soybean, rice, maize, moss and multicellular algae.
Image: Neil Harris, University of Alberta/Wikimedia Commons. http://bit.ly/12QsSbE; [2] http://bit.ly/182JpPt; [3] http://bit.ly/10IwGzf; http://aobblog.com/2013/07/seb2013-science-with-impact/; [5] http://en.wikipedia.org/wiki/Plant_hormone; [6] http://www.plant-hormones.info/Index.htm; [7] John Draper et al., Plant Physiology 127: 1539 1555, 2001; [8] http://1.usa.gov/12lOxIW; [9] Pacheco-Villalobos et al., PloS Genetics 9: e1003564, 2013; [10] http://bit.ly/14CJRT9; [11] Chang et al., eLIFE, 2: e00675, 2013; [12] http://bit.ly/13w5U0W; [13] http://bit.ly/12lPhh2.
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