Documente Academic
Documente Profesional
Documente Cultură
Sally Ann Leong U.S. Department of Agriculture – Agricultural Research Service, and University of
Wisconsin, Madison, Wisconsin, USA
1 CHALLENGES FOR FOOD SECURITY IN In the last century, the Green Revolution addressed the food
THIS CENTURY AND BEYOND needs of the human population through the development of
high yielding and early maturing varieties that performed
Today we face many critical issues in agriculture: (a) an under favorable conditions of nutrition and moisture (Khush
exponentially growing human population; (b) recurrent 2001). Prior to this time, increased production was dependent
on expansion of land area for crop production. In recent years,
famine; (c) the destruction of natural landscapes such as
yield gain through breeding has not kept pace with population
tropical rain forests to extend agriculture to previously unused
growth (Serageldin 1999). Furthermore, genotype is not the
lands; (d) the exodus of human civilization from rural
only factor limiting productivity. Abiotic and biotic stress
communities to cities; (e) the destruction of environmental
factors also contribute to losses in yield both pre and
quality resulting from exposure to agrochemicals, erosion of
postharvest. For example, in Asia these technical constraints
soils and salinization of soils as well as exhaustion and
on rice production may reduce production by 23% (Evanson
contamination of fresh water resources; (f) the loss of bio-
et al. 1996). Socioeconomic constraints also contribute to
diversity through monocropping and the destruction of natural practices that affect yield. Ninety percent of the world’s rice is
habitats; (g) the reliance of agricultural production, transport, grown in Asia on small farms with limited resources. Thus,
and storage systems on fossil fuel; (h) the acquisition and decisions are made based on economics rather than achieving
concentration of agricultural wealth by multinational corpor- technically optimum yields. Despite much research on the
ations; and (i) an issuant lack of knowledge by a growing application of biotechnology to solve these technical
proportion of human civilization on how to cultivate, prepare, production constraints, biotechnology has had limited impact
and preserve food. The United Nations Food and Agriculture to date on rice production in Asia (Houssain 1997). This has
Organization predicts that agricultural productivity in the been due in part to the reluctance to adopt the use of genetically
world will be able to sustain the growing human population by modified organisms (GMOs) in most countries of Asia. China
2030 but hundreds of millions of people in developing is the only Asian country that has embraced biotechnology on
countries will remain hungry and environmental problems any notable scale as a solution to technical production
caused by agriculture will remain serious (FAO 2002). By constraints in agriculture (Huang et al. 2002; Pray et al. 2002).
2025,83% of the expected global population of 8.5.2 billion For example, over four million smallholders have been able to
will be in the developing world (United Nations 2002). The increase yield and reduce pesticide costs and adverse health
social consequences are obvious. Food is a basic human need effects of applying pesticides by using transgenic Bt-cotton
and right. How can we sustain the food needs of the earth’s (Pray et al. 2002). Another constraint relates to the complex-
biotic community in the 21st century and beyond while ities of ownership rights that can delay and discourage the
preserving environmental quality and the diversity and quality scientific application of biotechnology discoveries and their
of life on earth (Time, August 26, 2002)? What solutions can transfer to the market place (Kowalski et al. 2002). Finally,
biotechnology provide to address these problems (Khush public concern about the safety of consuming GMOs has left
and Bar 2001)? tons of food aid containing transgenic corn untouched in
Marker
RFLP Restriction fragment length polymorphism
RAPD Random amplified polymorphic DNA
APD Amplified polymorphic DNA
CAP Cleaved amplified polymorphism
AFLP Amplified fragment length polymorphism
Figure 1 Cosegregation of a RFLP marker (R-23 16) with
Microsatellite Polymorphism based on different numbers
Pi-CO39(t) locus in homozygous F2 susceptible progenies.
on mono, di, tri, or
Genomic DNA of CO39 (R, resistant), 51583 (S, susceptible) and
tetranucleotide repeats
F2 progenies was digested with Dra1, blotted and probed with
CDNA-AFLP cDNA amplified restriction fragment length
R-2316. Recombinant progenies show DNA fragments from both
polymorphism
parents. Phosphoimage of Southern blot is shown.
1999; Gebhardt and Valkonen 2001; Huang and Gill 2001; Li and 93-11 has revealed numerous NBS-LRR-containing
et al. 1999; Shen et al. 1998; Speulman et al. 1998). This sequences as well as sequences potentially encoding other
analysis has been particularly well advanced in wheat and its minor classes of R genes and Arabidopsis genes known to
relative Aegilops tauschii. Resistance and defense response control defense response signal transduction (Goff et al. 2002;
genes in A. tauschii are localized in clusters primarily in Yu 2002). Preliminary studies based on conservation of
distal/telomeric regions of the genome (Boyko et al. 2002) RGAs in comparative maps of the grasses have shown
while in Chinese spring wheat defense response genes are evidence for some conservation but also redistribution of this
localized in clusters and/or at distal regions of chromosomes class of genes among the grasses (Leister et al. 1998).
(Li et al. 1999). In many cases, these genes or gene homologs Likewise a detailed comparison of a syntenic region between
have been correlated with loci that affect quantitative or barley and rice did not reveal any candidate resistance genes
single gene resistance in the respective plants. For example, in rice that could be the ortholog of Rpgl in barley (Han et al.
QTLs with large effects in wheat were shown to contain 1999; Kilian et al. 1997).
RGAs or clusters of defense response genes such as catalase,
chitinase, thaumatins, and an ion channel regulator (Faris
et al. 1999). Similar results are emerging in the genomes of 2.1.2 Differential cDNA-AFLP Screens
potato (Gebhardt and Valkonen 2001), Arabidopsis (Speul-
man et al. 1998) and pepper (Pflieger et al. 2001). Differential cDNA-APLP screening has been done to isolate
Efforts are underway to functionally characterize 179 hypersensitive response (HR)-specific genes to the Clade-
NBS-LRR-encoding genes that may encode disease resist- sporium fulvum elicitor Avr4 in tomato and has led to the
ance genes in the Arabidopsis genome (Figure 2). These isolation of a previously known and corresponding disease
have been organized into subclasses and their distribution resistance gene cluster Cf-4 as well as numerous new
mapped to the chromosomal sequence (Michelmore 2002; candidate genes involved in the HR response (De Wit et al.
www.nibh-rs.ucdavis.edu). A publicly available, draft 2002; Takken et al. 2001). This method is a robust and
ordered sequence of the rice genome is anticipated by the inexpensive way to identify differentially expressed genes
end of 2002 (http://rgp.dna.affrc.go.jp/cgi-bin/statusdb/ involving the digestion of cDNAs with two different
seqcollab.pl) and will allow comparisons to be done across restriction enzymes and the amplification of the resulting
syntenic regions of grass genomes (http://www.gramene.org!). products after ligation to adapters for these enzymes. The
The unordered draft sequence of rice varieties Nipponbare sizes of the resulting amplicons are measured by gel
2.1.5 Identification of QTL-Associated Genes It should be emphasized that candidate genes are simply
“candidate” genes and that confirmation of a gene’s function
Very few QTL studies in plants have led to the cloning of a with a genetically and/or expression-defined phenotype must
single gene within a QTL that is responsible for the variation be done by transformation and complementation tests
seen [reviewed in Buckler and Thornsberry (2002)]. These (Farman and Leong 1998; Orbach et al. 2000; Song et al.
few examples represent QTLs that had major effects on 1995; Wang et al. 1999; Yoshimura et al. 1998). Recently
variation. Buckler and Thornsberry (2002) have proposed that gene silencing has also been successfully applied to study
association approaches should be also considered to provide gene function in several plants (Azevedo et al. 2002;
improved resolution and to reduce the time of analysis as Baulcomb et al. 2002; Peart et al. 2002; Wesley et al. 2001).
mapping populations are not needed since natural variation in This method involves the cloning of a small fragment
a population is investigated instead. The resolution of (, 200 nucleotides) of a gene into an expression vector and
association that can be obtained depends on the linkage transforming the plant [reviewed in Baulcomb et al. (2002)].
disequilibrium (LD) structure of the population of organism The resulting small RNA is made double stranded and then is
being studied and some insight on candidate gene(s) to target. digested into small dsRNA fragments (siRNA, small
Studies on LD structure have shown that inbreeding plants interfering RNA), which are thought to guide RNAse to the