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INTRODUCTION
Statistical analyses.
hj l [1k pi#]
n
9nk1
:
n
9nk1
:
RESULTS
Allozyme variation
Table 1. Allelic diversity estimates of each locus for five species of enteric bacteria
Locus
ADH
AK
G6PD
IDH
MDH
ME-1
ME-2
MPI
MR-1
MR-2
MR-3
MR-4
PGD
PGI-1
PGI-2
PGM
SDH
SOD-1
SOD-2
Evenness hj (alleles*)
E. coli
C. freundii
H. alvei
K. pneumoniae
K. oxytoca
0n42 (5)
0n36 (3)
0n00 (1)
0n35 (4)
0n19 (3)
0n03 (2)
0n16 (3)
0n50 (5)
0n22 (4)
0n59 (2)
0n18 (1)
0n21 (2)
0n48 (4)
0n27 (4)
0n07 (2)
0n42 (4)
0n19 (3)
0n37 (3)
0n33 (4)
0n32 (4)
0 (1)
0 (1)
0n68 (5)
0n28 (4)
0n22 (1)
0n57 (4)
0n33 (5)
0n56 (5)
0n71 (6)
0n54 (4)
0n54 (4)
0 (1)
0n04 (2)
0 (1)
0n30 (4)
0n64 (4)
0n61 (5)
0n58 (4)
0n49 (2)
0n47 (5)
0n74 (5)
0n49 (2)
0n27 (3)
0n71 (5)
0n04 (1)
0n04 (1)
0n08 (2)
0n08 (1)
0n18 (3)
0n33 (4)
0n54 (5)
0n15 (4)
0n08 (2)
0n14 (1)
0n11 (2)
0n11 (1)
0n62 (4)
0n18 (5)
0n11 (2)
0n64 (4)
0n11 (2)
0n18 (3)
0n43 (2)
0n11 (2)
0n04 (2)
0n49 (5)
0n51 (4)
0n11 (2)
0n50 (2)
0n35 (3)
0n11 (3)
0n59 (5)
0n30 (3)
0n36 (3)
0n56 (6)
0n45 (2)
Table 2. Summary statistics of genetic diversity and structure for five species of enteric bacteria
.................................................................................................................................................................................................................................................................................................................
Definitions : n, number of isolates examined ; m, number of loci scored ; alleles, mean number of alleles per locus ; G, haplotype
diversity ; H, mean genome diversity (based on all isolates), HET, mean genome diversity (based on electrophoretic types), Vo\Ve,
multi-locus linkage disequilibrium estimate ; P Vo\Ve, probability that alleles are randomly associated.
Species
Alleles
HET
Vo/Ve
C. freundii
H. alvei
K. oxytoca
K. pneumoniae
E. coli
32
52
52
51
59
13
16
15
15
17
3n4
3n1
2n5
2n8
3n1
0n98
0n99
0n95
0n96
0n99
0n38
0n37
0n34
0n23
0n27
0n39
0n39
0n41
0n28
0n30
2n59
2n80
3n06
2n91
1n56
2676
P Vo/Ve
P
P
P
P
P
0n002
0n008
0n002
0n005
0n001
Diversity
(H) (12 loci)
Vo/Ve
(8 loci)
0n26
0n26
0n35
0n37
0n39
1n61
1n13
1n58
2n03
1n96
E. coli
P Vo/Ve
02
E. coli
03
04
05 08
12
16
20
K. pneumoniae
K. pneumoniae
E. coli
H. alvei
K. oxytoca
C. freundii
P
P
P
P
P
0n001
0n029
0n001
0n001
0n001
02
03
02
04
05 08
12
16
20
24
28
K. pneumoniae
03
04
05 08
12
16
20
K. oxytoca
02
28
H. alvei
H. alvei
24
24
28
C. freundii
03
04
C. freundii
05 08
12
16
20
24
28
K. oxytoca
Linkage disequilibrium
02
03
04
Diversity, H
05 08 12 16 20 24 28
Linkage disequilibrium, Vo/Ve
.................................................................................................................................................
Species
C. freundii
E. coli
H. alvei
K. oxytoca
K. pneumoniae
Host locality
Host family
Family/locality
11n8 (P 0n001)
4n5 (P 0n015)
17n5 (P 0n001)
0n3 (P 0n447)
21n9 (P 0n001)
2n6 (P 0n272)
5n5 (P 0n018)
7n2 (P 0n033)
0n4 (P 0n421)
19n8 (P 0n001)
5n6 (P 0n007)
6n4 (P 0n049)
19n0 (P 0n001)
4n0 (P 0n188)
22n1 (P 0n001)
pneumoniae. Population structure explained a significant, but small, amount of the variation in E. coli. For C.
freundii and H. alvei geographical effects explained
more of the observed variation than did the family of
host from which the strains were isolated.
DISCUSSION
Table 5. Summary of the impact of host locality and host family on the occurrence and
genetic structure of five species of enteric bacteria
.....................................................................................................................................................................................................................................
Yes indicates that host family or host locality had a statistically significant effect on the probablity
of occurrence (Gordon & FitzGibbon, 1999) or explained a significant amount of the genetic
variation (Table 4) ; No , indicates that no statistically significant effect was observed.
Species
C. freundii
E. coli
H. alvei
K. oxytoca
K. pneumoniae
Host locality
Host family
Probability of
occurrence*
Genetic
Diversity
Probability of
occurrence*
Genetic
Diversity
Yes
Yes
No
No
Yes
Yes
Yes
Yes
No
Yes
No
Yes
Yes
Yes
No
No
Yes
Yes
No
Yes
1
1j2Ne U
where Ne is the effective population size and U is pergenome rate of recognizable mutations. U l nm, where
is the rate of an amino acid change, n is the number of
possible alleleic variants at a locus and m is the number
of loci. As previously stated, there are no data to suggest
that there are significant differences in among the
species examined. Nor are there any statistically significant differences among species in the number of alleles
detected at the 12 loci common to all species. Hence,
there should be no difference in U among species.
Therefore, the effective population size of a species will
be proportional to 1\F. Estimates of F, based on the 12
loci common to all species indicates that the rank order
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REFERENCES
Atwood, K. C., Schneider, L. K. & Ryan, F. J. (1951). Periodic
selection in Escherichia coli. Genetics 37, 146155.
Bennet, A. F. & Lenski, R. E. (1993). Evolutionary adaptation to
temperature. II. Thermal niches of experimental lines of
Escherchia coli. Evolution 47, 112.
Bisercic, M., Feutrier, J. Y. & Reeves, P. R. (1991). Nucleotide
sequences of the gnd genes from nine natural isolates of
Escherichia coli : evidence of intragenic recombination as a
contributing factor in the evolution of the polymorphic gnd locus.
J Bacteriol 173, 38943900.
Brown, A. D. H., Feldman, M. W. & Nevo, E. (1980). Multilocus
structure of natural populations of Hordeum spontaneum.
Genetics 96, 523536.
Caugant, D. A., Levin, B. R. & Selander, R. K. (1981). Genetic
diversity and temporal variation in the E. coli populations of a
human host. Genetics 98, 467490.
Caugant, D. A., Levin, B. R. & Selander, R. K. (1984). Distribution
of multilocus genotypes of Escherichia coli within and between
host families. J Hyg 92, 377384.
Clemens, W. A., Richardson, B. J. & Baverstock, P. R. (1989).
43844388.
Milkman, R. (1973). Electrophoretic variation in Escherichia coli
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