Unique thrombin inhibition mechanism by anophelin,
an anticoagulant from the malaria vector Ana C. Figueiredoa, Daniele de Sanctisb, Ricardo Gutirrez-Gallegoc,d, Tatiana B. Cereijaa, Sandra Macedo-Ribeiroa, Pablo Fuentes-Priore, and Pedro Jos Barbosa Pereiraa,1 a Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, 4150-180 Porto, Portugal; bEuropean Synchrotron Radiation Facility (ESRF), Structural Biology Group, 38043 Grenoble Cedex, France; cBioanalysis Group, Neurosciences Research Program, Hospital del Mar Medical Research Institute (IMIM)Parque de Salud Mar and dDepartment of Experimental and Health Sciences, Pompeu Fabra University, 08003 Barcelona, Spain; and eInstitute for Biomedical Research, Hospital de la Santa Creu i Sant Pau, 08025 Barcelona, Spain
orientation for blocking enzymatic activity.
Numerous animal species, from insects (mosquitoes) to mammals (vampire bats), Anophelin, in contrast, is completely defeed primarily or exclusively on fresh void of cysteine residues and displays blood from their prey. These parasites considerable exibility in solution. The produce some of the most potent antago3D structure of the anophelinthrombin nists of the blood clotting system known, complex revealed an unforeseen reverse which are critical for their hematophagous orientation of the inhibitor, which binds to lifestyle. Many of these compounds are the proteinase surface in a direction opsmall polypeptides that inhibit the proposite to the direction of natural subteolytic enzymes of the clotting cascade, strates, although it preserves the majority notably thrombin. Anopheles mosquitoes of the molecular contacts established beare widespread hematophagous parasites tween thrombin and bona de substrates and important vectors of malaria, a po(Fig. P1). In addition to blocking physical tentially lethal disease that affects 500 access to thrombins active site, anophelin million humans worldwide. Here, we show also impairs enzymatic activity by disruptthat a salivary polypeptide from Anopheles, ing the characteristic chargerelay system anophelin, inhibits thrombin by binding through specic interactions with two of in an orientation opposite to the orientathe residues required for catalysis. The tion of substrates and disrupts thrombins extent of the interactions and the chemical catalytic machinery (Fig. P1). This Fig. P1. The malaria vector uses a unique and structural complementarity between unique molecular mechanism has implianticoagulant strategy. The crucial procoagulant thrombin and anophelin explain the antienzyme, thrombin (gray ellipsoid), has two positively cations for the design of synthetic coagulant activity of this inhibitor. Anocharged surface regions (blue) important for the antithrombotics. phelins unique mechanism of action, now interaction with substrates and other macromoThe overwhelming majority of prounveiled, has been conserved during the lecular partners. Natural procoagulant substrates teinaceous inhibitors of proteolytic evolution of New and Old World mos(e.g., brinogen) bind across thrombins active site enzymes works by physically blocking acquitoes, and it can help in the conception (dashed rectangle) and are cleaved between the P1 cess of the substrate to the active site, and of more effective and specic thrombin and P1 residues, leading to thrombus formation in most cases, they mimic the interactions (Left). Conversely, anophelin binds to thrombin in inhibitors with potential application established by natural substrates. In the an unexpected reverse orientation (relative to as antithrombotics. resulting proteinaseinhibitor complexes, natural substrates), blocking its catalytic activity in a unique way and effectively impairing blood extensive contacts form between the target 1. Bode W, Huber R (2000) Structural basis of the coagulation (Right). N and C denote the N and C enzyme and compact and ordered regions endoproteinase-protein inhibitor interaction. Biochim termini of the polypeptide chain, respectively. Biophys Acta 1477(12):241252. of the inhibitors, explaining the high af2. Koh CY, et al. (2011) Crystal structure of thrombin in nity of the interactions (1). Some known complex with S-variegin: Insights of a novel mechathrombin inhibitors lack intramolecular covalent links and possess nism of inhibition and design of tunable thrombin inhibitors. PLoS One 6(10): unique sequences rich in polar residues, which are likely to be e26367. 3. Valenzuela JG, Francischetti IM, Ribeiro JM (1999) Purication, cloning, and synthesis of intrinsically disordered in isolation. Although thrombin cleaves a novel salivary anti-thrombin from the mosquito Anopheles albimanus. Biochemistry some of these molecules (2), we found it not to be the case for 38(34):1120911215. anophelin (MEROPS family I77). Anophelin is an efcient 4. Ronca R, et al. (2012) The Anopheles gambiae cE5, a tight- and fast-binding thrombin anticoagulant previously identied in two distinct species of inhibitor with post-transcriptionally regulated salivary-restricted expression. Insect Anophelesthe Central American A. albimanus (3) and the Biochem Mol Biol 42(9):610620. African A. gambiae (4). Here, we performed structural and functional analyses of anophelins. We started by producing anophelins from all described sources of the anticoagulant and observed Author contributions: A.C.F., D.d.S., R.G.-G., S.M.-R., P.F.-P., and P.J.B.P. designed research; A.C.F., D.d.S., R.G.-G., and T.B.C. performed research; A.C.F., D.d.S., R.G.-G., S.M.-R., P.F.-P., that, despite their relatively low sequence conservation, all beand P.J.B.P. analyzed data; and A.C.F., S.M.-R., P.F.-P., and P.J.B.P. wrote the paper. haved as efcient thrombin inhibitors. Biochemical and biophysical The authors declare no conict of interest. characterizations of mutated anophelins identied a highly This article is a PNAS Direct Submission. conserved region essential for anophelins inhibitory activity. X-ray Data deposition: The crystallographic atomic coordinates and structure factors have been crystallographic studies unveiled the molecular mechanism of acdeposited in the Protein Data Bank, www.pdb.org (PDB ID codes 4E05 and 4E06). tion of the anophelin from A. albimanus. Most structurally char1 To whom correspondence should be addressed. E-mail: ppereira@ibmc.up.pt. acterized natural serine proteinase inhibitors form highly disuldeSee full research article on page E3649 of www.pnas.org. linked cores that engage in extensive contacts with the target Cite this Author Summary as: PNAS 10.1073/pnas.1211614109. enzyme, positioning the inhibitory segments in the appropriate www.pnas.org/cgi/doi/10.1073/pnas.1211614109