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PC Demonstration 2008
Step-by-step:
A practical manual for using Sedsim
Predictive Geoscience Group
CSIRO Petroleum
Australia
1. INTRODUCTION
The Sedsim three-dimensional stratigraphic forward modelling software enables a
variety of inter-dependent surface and basin-forming processes to be studied at both
geological and engineering time scales. The results reflect possible changes in sediment
distribution over time as a function of the depositional environment.
Basic Principles of Sedsim Operation
Hydrodynamics make up the core of the Sedsim program and utilise an approximation
to the Navier-Stokes equations. The full Navier-Stokes equations describing the fluid
flow in three dimensions are currently impossible to solve due to limitations in
computer speed (it would take longer to simulate a flow than the real event). Sedsim
instead simplifies the flow by utilising isolated fluid elements to represent continuous
flow. This Lagrangian approach to the hydrodynamics allows for a significant increase
in the speed of computation and simplification of the fluid flow equations. The
downside of this approach is that individual events such as a rapid variation in fluid
flows cannot be modelled. Simulations over geological periods can at best hope to
capture the mean conditions and create a general pattern of sediment distribution, rather
than capture the exact timing of each individual pulse of material. The Navier-Stokes
equations are modified into non-linear Ordinary Differential Equations (ODEs). These
equations are now solved using a modified Cash-Karp Runge Kutta scheme (Press et al.,
1992) that ensures stable and accurate 4th order in time solutions. The Sedsim program
is written in Fortran 95 and has no graphics component. The input and output are in the
form of ASCII text files that can be opened in any text editor. Sedsim can run on any
computer for which a Fortran 95 compiler exists. The code is not suitable for parallel
processing, so a fast (ideally 64 bit) processor is ideal. The binary code distributed on
the Sedsim 2008 Demo Disk has been optimised for use on Pentium IV processors. The
Sedsim Demo code runs under an MSDOS command window and is limited to 25 cells
x 25 cells by 40 display time steps.
To view the results in a 3D graphical representation you must install the Sedview 2.0.4
program included on the Sedsim 2008 Demo Disk.
Page 1 / 22
/Example_cif
/Example_input
/Example_output
/Getting_started
This version of Sedsim7.01 is limited to 25 x 25 grid cells and 100 display time steps. It
is enough to experiment with various aspects of forward modelling. The default
command files have grid-in-grid switched off ("# INTERNAL GRID") and the t1_1
simulation should take a few seconds on a Pentium IV 800MHz. If the "INTERNAL
GRID" is switched on then it will take around 5 minutes.
Page 2 / 22
Coordinate systems
As shown in Figure 1, all distance measurements are taken from the bottom left (or
South West corner) in metres. All angles are calculated clockwise from North in
degrees.
Number
of rows
3
2
1
1
Number
of columns
Files
Sedsim command and input files are text files.
In Windows format: Copy file t1_1.sif to t1_1a.sif
Or in MS_DOS formatD:\> Copy t1_1.sif t1_1a.sif
Use a text editor to edit the file t1_1a.sif
Have a look through the file. We will make some changes to this file later.
Page 3 / 22
2. RUN SEDSIM
Step 1: Create a directory under hard drive D: name it as sedsim
D:\sedsim
Step 2: Insert the Sedsim 2008 Demo Disk, copy all the files in the folder
getting_started to D:\sedsim
Step 3: Open a command prompt
By click: Start Programs Accessories Command Prompt
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Page 5 / 22
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(required)
TIME
The TIME section inputs the simulation start time, end time, display interval and
flow sampling interval. They are all in years.
TIME
#Time parameters
(required)
#
# Simulation start time [a]
End time [a]
0.0
20000.0
# Display interval [a]
Flow sampling interval [years]
1000.0
400.0
#--------------------------------------------------------
The display interval 1000.0 means that Sedsim outputs a simulation result every
thousand years. The flow sampling interval tells how often the fluid elements are
released from the sources. Usually, a larger sampling interval delivers faster
simulations.
CSIRO Petroleum, Australia, http://www.csiro.au/products/Sedsim.html
Page 7 / 22
GRID
1
1
2
3
.
.
.
. . .
Columns
rows
SOURCES
This section defines the location and properties of sediment sources in the
simulation area.
Page 8 / 22
SEDIMENTS
This section lists the physical properties of the four clastic sediment grain to be
input at the sources. The first line is the diameter of the grains (in millimetre),
the second line is the densities (kg/m3). The last line defines the sediment
transport mechanism, 1= suspended load, 0= bed-load.
1027.0.
MANNING
Input Manning coefficients for open-channel flow, hyperpycnal flow,
hypopycnal flow, and debris flows.
The default values are: 0.02, 0.01, 0.07, 0.08
Page 9 / 22
1.0E2
SLOPE ANGLES
This section specifies the maximum slopes for each fraction of sediment (in ratio
of vertical to horizontal, dz/dx). The first line contains four maximum slopes of
submerged sediment for coarse, medium, fine, and finest grains respectively.
The second line is the maximum slopes for dry sediment. The third line is for
reworked sediment below sea level.
The two numbers in the fourth line are the maximum slopes of two types of
carbonate grains under sea level. The fifth line contains the slopes of two types
of carbonate grains above sea level.
The sixth line is the minimum slope of all fractions of sediment. The last line in
this section is the slope module calling interval in years.
SLOPE ANGLES
# Define maximum slope per grain size
(optional)#
# Max. slope of four grain sizes below sea level (dz/dx)
# Max. slope of four grain sizes above sea level (dz/dx)
# Max. slope of four reworked grain sizes below sea level
(dz/dx)
0.05
0.03
0.02
0.01
0.0001 0.0001 0.0001 0.0001
0.005
0.004
0.003
0.002
# max slope carb grains below sea level (dz/dx) 2 grains
# max slope carb grains above sea level (dz/dx) 2 grains
0.005 0.004
0.0001 0.0001
# Minimum slope (dz/dx)
# Slope module calling interval [years]
0.0001
100.0
#-------------------------------------------
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POROSITY TABLE
The table are used for sediment compaction. Details in Appendix A.
Time
Time
Sea level
Sea level
year
0
-25000
-50000
-75000
-1E+05
-120 m
-20
End time
rows
TECTONICS
Columns
Sedsim
adjusts
the
subsidence
every
PARAMETRIC
SAMPLING
INTERVAL Typically
. . .
adjustment occurs every
. . . Start time End time
100 years. There is very
little
computational
expense for frequent
calling. Tectonics can be
turned on and off for
certain periods. Each
individual point can be
Figure 8 The format of tectonics input file
independently
moved
vertically. No extension,
compression or folding is considered. Note that the grid nodes in the tectonic file
are arranged the same as the topography file the first value is the relative
movement in metres of the SW corner of the simulation over the specified time
period. Positive is upward movement, Negative is downward.
Page 11 / 22
DEPOSIT
Input the name of a file which contains the sediment deposited prior to the
general simulation. For example, deposit_file.spc.
Careful: Do not switch on CONTINUE and DEPOSIT at the same time. i.e. run
only the first simulation of a series with DEPOSIT switched on. Subsequent runs
using CONTINUE will automatically pick up the underlying deposit.
column
layer
finest
organic 2 mean
rudist pelagic organic 1
porosity
. . .
. . .
Figure 9
CONTINUE
To continue a previous simulation you have to prepare a new command file,
with different name from the previous simulation. In this new command file the
CONTINUE command section must be switched on. In this section the first
number input is the start time of the previous simulation, then the second line
gives the name of the previous simulation.
Careful: a) the previous simulations GRAPH, TOT, and FLO files must be
available in the directory of the continued simulation; b) Keep DEPOSIT
command off if continuing a simulation
Page 12 / 22
Function/Process
Provides two choices at N S E W
boundaries. 0= regular boundary, 1= wall
boundary (eg. Flume tank)
Provides layered sediment composition of
basement.
Syn-deposition compaction by overlying
sediment
Simulates carbonate growth process by
fuzzy logic.
Simulates the formation of deep ocean
contourites.
A simplified fluid element flow option for
simulations with large time and space scales
Allows a higher resolution area nested inside
the large simulation domain.
Provide the detailed topography in a nested
grid.
Simulates isostatic response as a function of
sediment loading/unloading
The interval to update sea level and tectonic
movement.
Simulates gravity flow and turbidites
deposition.
For sediment down-slope diffusion
Defines fluid element size
Simulate storm-induced cross-shore
sediment transport
Calculates the storm wave transformation
across the simulation area
Mark the position of wells or other markers
Give beach information i.e. berm height, sea
level fluctuation, etc
Wave-induce longshore sediment transport
model based on wave record (Short time
period)
Wave-induce longshore sediment transport
model based on a given general transport
rate (Geological time scale)
Wave transformation in shallow water.
Page 13 / 22
5. SEDSIM OUTPUT
When a simulation finishes successfully there are 8 to15 output files created. Those files
preserve the fluid element information, deposition/erosion record, sediment composition
at each layer, etc. Most output information can be displayed by Sedview graphically. In
addition to that, Sedsim allows users to directly read those data.
t1_1.TIME
t1_1.BAS
t1_1.FLO
t1_1.INFO
t1_1.MASBAL
t1_1.TOP
t1_1. GRAPH
t1_1.TOT
Page 14 / 22
6. REFERENCES
Griffiths, C. M., Dyt, C., Paraschivoiu, E., and Liu, K., 2001 - Sedsim in Hydrocarbon
Exploration. In Merriam, D., Davis, J. C. (Eds) Geologic Modelling and
Simulation. Kluwer Academic, New York, 2001.
Martinez, P., Harbaugh, J. W., 1993 - Simulating nearshore environments. Pergamon
Press, New York.
Press, W. H., Flannery, B. P., Teukolsky, S. A., and Vetterling, W. T., 1992 - Numerical
Recipes. The art of scientific computing. Cambridge University Press.
Tetzlaff, D.M., Harbaugh, J.W., 1989 - Simulating clastic sedimentation; computer
methods in geosciences, Van Nostrand Reinhold, New York
Page 15 / 22
Page 16 / 22
Page 17 / 22
ss8_3_res250
# x,y location of the grid (SW corner)
26000 22000
# grid spacing(m), number of fine row, number of columns
250
41
41
#----------------------------------------------------------#DEPOSIT
# Sediment deposited prior to this run. Do not
(optional)
# CONTINUE and DEPOSIT at the same time. Sediment initailly deposited will
# be recorded anyway
# <deposit_file>.spc
#
# Deposit file name
bigfatinitiallayer.spc
#----------------------------------------------------------#INTERNAL TOPOGRAPHY GRID
# topography grid file name.
(optional)
# If you have the internal grid turned on, you can specify the initail surface
# if you don't do this, one will be genrated from the coarse grid
xxx.top
#
#----------------------------------------------------------WELL LOCATIONS
# locations in meters from sedsim-grid origin (draws them in sedview)
# X Y
# well name
5550 2050 source_1
12550 2550 source_2
6834 14964 sedsim_a
7324 18300 explore_1
14000 14964 produce_1
* end of well data
#----------------------------------------------------------#SLOPE FAILURE
# Parameters for calculating slope failure
(optional)
#
# Slope angles should be greater than that set in the SLOPE section.
# Typical turbidite volume concentrations : Bagnold maximum of C=0.09
# and those referred to in Piper and Savoye (1993) for the Var fans of
# 0.015 to 0.12 refer to volume concentration. Thus 0.1 volume concentration
# for a sediment of density 2650 kg/m3 , c = 265 kg/m3
# and for C = 0.05, c=132 kg/m3
#
# Maximum Subaerial and Marine slope before failure can occur
(dz/dx) (dz/dx)
# Minimum and maximum height allowed to fail(m) (bigger heights will be split into
multiple fluid elements)
# Concentrations slumped material after release (kg/m^3)
# Concentration of the material where it transitions from a debris flow to a tubidite
(kg/m^3)
0.002 0.05
0.5
5.0
100.0
60.0
#--------------------------------------------------------#CONTOUR CURRENT
# current calling interval [a]
10.0
# starting time, ending time [a]
# maximum and minimum elevation where current occurs [m]
# flow rotation clockwise=1, counter-clockwise=-1,decide-by-code=0
# maximum near bottom flow strength m/s
# the latitude at Lower left (SW) corner, + North, - South [degree]
# sediment supply condition, supply 1, No-supply=0
# current supplied source sediment combination sum=1
#
# t1
t2
maxd
mind
clockwise
velocity (m/s)
lat supply %C
%M
%F
%FF %rudist %pelagic %org1 %org2
#
0
10000
-500
-600
1
0.2
-40
1
10.0
80.0
10
0
0
0
0
0
10000000 29000000
-200
-350
-1
0.27
40
1
10.0
80.0
10
0
0
0
0
0
*
#--------------------------------------------------------#CIRCULATION (CYCLIC)
# This module allows the input of external current data. the format for the
#input file is
Page 18 / 22
#
header line
#
x velocities -one for each grid point in standard matrix format
#
header line
#
y velocity -one for each grid point in standard matrix format
#
header line
#
r value -related to how much local stress is on the sea bed
#
(r lifts sediment -velocities move it)
# Frequency factor controls Circulation calling interval.
# The bigger the factor the longer the interval
# files will cycle until the end of the simulation
# astrix ends input list
# duration [years], frequency factor, input_file_name
20.0 10.0 Current_u_v_r.dat
30.0 10.0 Current_u_v_r_2.dat
*
#--------------------------------------------------------#CIRCULATION (LINEAR)
# This module allows the input of external current data. the format for the
#input file is
#
header line
#
x velocities -one for each grid point in standard matrix format
#
header line
#
y velocity -one for each grid point in standard matrix format
#
header line
#
r value -related to how much local stress is on the sea bed
#
(r lifts sediment -velocities move it)
# Frequency factor controls Circulation calling interval.
# The bigger the factor the longer the interval
# astrix ends input list
# start_time, end_time, frequency factor, input_file_name
2003 2023
10.0 Current_u_v_r.dat
2023 2053
10.0 Current_u_v_r_2.dat
*
#----------------------------------------------------------#STORM
# Provide frequency and individual storm parameters (optional)
#
# Angle of mean storm direction
[deg]
# Deviation of the storm direction [deg]
# Significant storm waveheight
[m]
# Duration of storm
[h]
# Mean storm return time
[y] (put 0.0 if exact storm records known)
240.0
0.0
2.0
5.0
0.0
#if the Mean storm return time is set as 0.0, then continue read
#exact time when storm happened
# The four columns in storm data file contain
# Time[year]
Incidence angle[deg]
Height[m] Duration[hour]
WIND_WAVEhourly_92_97.stm
#---------------------------------------------------------#STORM REFRACTION
# Calculate STORMs refraction,diffraction and breaking over the coastal region.
#
(optional)
# Dip direction of the gereral shoreline
[0.0 ~ 360.0][deg]
270.0
#---------------------------------------------------------#WAVES
# This module must be turned on to run any form of waves
# In addition, ONE of the FOUR other wave module must be turned on to run waves
# The other four modules are in order of complexity
# WAVE (RATE)
# WAVE (HEIGHT)
# WAVE (GRID-CYCLIC)
# WAVE (GRID-LINEAR)
# in addition
# WAVE REFRACTION may be turned on with WAVE (HEIGHT) or WAVE (RATE)
#
# Sediment supply conditions at 4 Boundaries
# The Non-supply condition represents the rocky cliff shoreline
# where waves can not transport sediment into the simulation area.
# The normal condition represents normal sandy or mudy beach, sediment
# can be transported into the simulation area.
# South
East
North
West
1==Normal, 0=No supply
1
1
1
1
#
# Berm height [m]
# Minimum mobile bed thickness [m]
Page 19 / 22
#
#
#
#
Page 20 / 22
# 0.25 WIND_WAVEjun_jul_aug.wvs
# 0.25 WIND_WAVEsep_oct_nov.wvs
# 0.125 WIND_WAVEdec_jan_feb.wvs
# *
#---------------------------------------------------------#WAVE (GRID-LINEAR)
# Note: WAVES module must also be turned on
# Enter a list of start time[year] and end time[year] and a filename containing wave
data
# the list terminates in a *
# After all the files have been read, the list will repeat
# Each file contains the
# Significant wave height[m] and Angle of incidence[deg] in block format e.g.
#
j=1
j=number of columns
#
Hs(1,1) Hs(1,2)..........Hs(1,numcol)
#
...
...
......... ...
#
...
...
......... ...
#
...
...
......... ...
#
Hs(numrow,1) ............Hs(numrow,numcol)
#
Ang(1,1) Ang(1,2)..........Ang(1,numcol)
#
...
...
......... ...
#
...
...
......... ...
#
...
...
......... ...
#
Ang(numrow,1) ............Ang(numrow,numcol)
#Note: All angles are specified by
#
N (0 or 360)
#
|
#
|
# (270) W-----------E (90)
#
|
#
|
#
S (180)
#
# 2005.000 2005.125 WIND_WAVEdec_jan_feb.wvs
# 2005.125 2005.375 WIND_WAVEmar_apr_may.wvs
# 2005.375 2005.625 WIND_WAVEjun_jul_aug.wvs
# 2005.625 2005.875 WIND_WAVEsep_oct_nov.wvs
# 2005.875 2006.125 WIND_WAVEdec_jan_feb.wvs
# 2006.125 2006.375 WIND_WAVEmar_apr_may.wvs
# 2006.375 2006.625 WIND_WAVEjun_jul_aug.wvs
# 2006.625 2006.875 WIND_WAVEsep_oct_nov.wvs
# 2006.875 2007.125 WIND_WAVEdec_jan_feb.wvs
# 2007.125 2007.375 WIND_WAVEmar_apr_may.wvs
# 2007.375 2007.625 WIND_WAVEjun_jul_aug.wvs
# 2007.625 2007.875 WIND_WAVEsep_oct_nov.wvs
# 2006.875 2008.000 WIND_WAVEdec_jan_feb.wvs
# *
#----------------------------------------------------------#WAVE REFRACTION
# Calculate wave,refraction, diffraction and breaking over the coastal region
#
(optional)
# Dip direction of the gereral shoreline
[0.0 ~ 360.0][deg]
#
270.0
#-------------------------------------------------------------SEA LEVEL
# Define sea level curve
(optional)
#
# Sea level curve file
sea1_1Ma.sl
#
#-------------------------------------------------------------#BASEMENT STRUCTURE
#name of the basement structure file (dep file)
xxx.DEP
#-------------------------------------------------------------TECTONICS
# Define tectonic movement
(optional)
#
# Tectonic movement file name
halfMa_1000m1.tec
#
#-------------------------------------------------------------#COMPACTION
# Enable compaction module; no parameters
(optional)
#-------------------------------------------------------------#ISOSTASY
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Page 22 / 22
# fastcurrents current
0.5
0.0
1.0
1.0
# normsalin
salinity
0.0
0.0
3.3
1.0
3.5 1.0
3.6 0.0
# farfromshore
shore
500.0
0.0
1000.0
1.0
# closetoreef carbdist
0.0
1.0
10.0
0.0
# slow_growth
growth
0.0
0.0
5.0e-4
1.0
# v_slow_growth growth
0.0
0.0
4.0e-5
1.0
# vv_slow_growth growth
0.0
0.0
1.0e-5
1.0
# *
#
# the format for defining fuzzy rules is
# carbonate_type = output_function_name = input_function_name1 and input_function_name2
and etc
# carbonate_type - must be one of "reef" "benthic" or "plancktonic"
# output_function_name - must be one of the output functions defined earlier (with
code_variable "growth")
# input_function_name - must be one of the functions defined earlier (without the
code_variable "growth")
# rules
# reefs
= slow_growth
= warmtohot and awayfromriver and vlittlesed and
highexposure and shallow
# benthics
= v_slow_growth = temptowarm and awayfromriver and littlesed and
highexposure and abovecarbcomp and medtodepwat3
# planktonics = vv_slow_growth = temptowarm and awayfromriver and littlesed and
highexposure and abovecarbcomp and medtodepwat4
# *
#
#
#
# membership functions
highexposure
expo
0.0
0.0
1.0
1.0
littlesed
sedrate
0.0005
1.0
0.001
0.0
vlittlesed
sedrate 0.00005
1.0
0.0001
0.0
shallow
depth
0.0
0.0
0.0
1.0
15.0 1.0
25.0 0.0
abovecarbcomp
depth
0.0
0.0
0.0
1.0 2000.0 1.0 5000.0 0.0
medtodepwat4
depth
20.0
0.0
50.0
1.0
medtodepwat3
depth
20.0
0.0
50.0
1.0
65.0 1.0
105.0 0.0
awayfromriver rivdist 10000.0
0.0 25000.0
1.0
warmtohot
temp
18.0
0.0
20.0
1.0
28.0 1.0 33.0 0.0
temptowarm
temp
12.0
0.0
14.0
1.0
20.0 1.0 22.0 0.0
slow_growth
growth
0.0
0.0
5.0e-4
1.0
v_slow_growth growth
0.0
0.0
4.0e-5
1.0
vv_slow_growth growth
0.0
0.0
1.0e-5
1.0
*
# rules
reefs
= slow_growth
= warmtohot and awayfromriver and vlittlesed and
highexposure and shallow
benthics
= v_slow_growth = temptowarm and awayfromriver and littlesed and
highexposure and abovecarbcomp and medtodepwat3
planktonics = vv_slow_growth = temptowarm and awayfromriver and littlesed and
highexposure and abovecarbcomp and medtodepwat4
*
#----------------------------------------------------------#TIDAL SPEED
# this module is used in conjunction with organics and carbonate growth. (when tidspd
is specified)
# the file contains the typical file speeds for each grid location
filename.tid
#----------------------------------------------------------#SALINITY
# this module is used in conjunction with organics and carbonate growth. (when salinity
is specified)
# the file contains the typical slainity values for each grid location
filename.sal
#----------------------------------------------------------#TEMPERATURE GRID
# this module is used in conjunction with organics and carbonate growth. (when
temperature is specified)
# the file contains the surface temperature values for each grid location
# when this file module is used, the temperature file specified in ORGANICS or
CARBONATES is not used
filename.tpt
#----------------------------------------------------------#ORGANICS
# Parameters for calculating the growth of organic material
(optional)
100
# carb grain size diameter (one for each grain) for when the stuff is busted up
Page 23 / 22
0.3 0.3
# carb grain density (one for each grain)
2050.00 2050.00
# temperature file (not needed if already listed in Carbonates section)
yampi_1Ma.tpt
#
#----------------------------------------------------------#EXPERT ORGANICS
#
# Use this if the default settings of the carbontaes need modifying.
#
# the format for defining membership functions is
# function_name codevariable xpoint1 ypoint1 xpoint2 ypoint2 xpoint3 ypoint3 etc
#
# function_name - user defined variable name
# code_variable - must be one of the key words
#
growth - defines the function as a output membership function controlling
carbonate growth rate
#
depth - water depth
#
current - current velocity in the area - you must have circulation turned on)
#
shore - distance in metres to the shoreline
#
rivdist - distance in metres to the nearest fluid element or river source
#
sedrate - sediment rate in m/year
#
temp - temperature in degrees celcius
#
expo - a measure of the degree of shelter an ocean point has, values around 1 give
a relatively open water source
#
land will give a very high value around 10, A completely sheltered deep
piece of water will give a value of -0.7
#
a very open, shallow piece of water will give a value of around 5.5
#
note: if you have waves on, and a non zero wind shadow, this will increase
the exposure to some degree
#
carbdist - distance to nearest carbonate reef
#
salinity - degree of salinity in the system (defined in a file in the SALINITY
section)
#
tidspd - maximum velocity of the tide (defined in a file in the TIDAL SPEED
section)
#
valley - the normalise number of surrounding points uphill from the reference
point
#
(calclated from all grid points within two grid cells)
#
-1 = all points downhill, 1 = all points uphill [-1,1]
#
gradient - the average gradient of the point (calclated from all grid points
within two grid cells)
#
negative value indicates that most surrounding points are downhill from
the point)
# xpoint ypoint - coordinates describing the shape of the membership function. ypoint
must be between 0 and 1.
#
see below for examples
#
# membership functions
# highexposure
expo
0.0
0.0
1.0
1.0
# littlesed
sedrate
0.0005
1.0
0.001
0.0
# vlittlesed
sedrate 0.00005
1.0
0.0001
0.0
# shallow
depth
0.0
0.0
0.0
1.0
15.0 1.0
25.0 0.0
# abovecarbcomp
depth
0.0
0.0
0.0
1.0 2000.0 1.0 5000.0 0.0
# medtodepwat4
depth
20.0
0.0
50.0
1.0
# medtodepwat3
depth
20.0
0.0
50.0
1.0
65.0 1.0
105.0 0.0
# awayfromriver rivdist 10000.0
0.0 25000.0
1.0
# warmtohot
temp
18.0
0.0
20.0
1.0
28.0 1.0 33.0 0.0
# temptowarm
temp
12.0
0.0
14.0
1.0
20.0 1.0 22.0 0.0
# fastcurrents current
0.5
0.0
1.0
1.0
# normsalin
salinity
0.0
0.0
3.3
1.0
3.5 1.0
3.6 0.0
# farfromshore
shore
500.0
0.0
1000.0
1.0
# closetoreef carbdist
0.0
1.0
10.0
1.0
# slow_growth
growth
0.0
0.0
5.0e-4
1.0
# v_slow_growth growth
0.0
0.0
4.0e-5
1.0
# vv_slow_growth growth
0.0
0.0
1.0e-5
1.0
# *
#
# the format for defining fuzzy rules is
# organic_type = output_function_name = input_function_name1 and input_function_name2
and etc
# organic_type - must be one of "coal" "green_algae" or "zoo_benthos"
# output_function_name - must be one of the output functions defined earlier (with
code_variable "growth")
# input_function_name - must be one of the functions defined earlier (without the
code_variable "growth")
Page 24 / 22
# rules
# coal
= slow_growth
= warmtohot and awayfromriver and vlittlesed and
highexposure and shallow
# green_algae = slow_growth
= temptowarm and awayfromriver and shallow
# zoo_benthos = slow_growth
= cool and mediumdepth
# *
#
# membership functions
highexposure
expo
0.0
0.0
1.0
1.0
littlesed
sedrate
0.0005
1.0
0.001
0.0
vlittlesed
sedrate 0.00005
1.0
0.0001
0.0
shallow
depth
0.0
0.0
0.0
1.0
15.0 1.0
25.0 0.0
abovecarbcomp
depth
0.0
0.0
0.0
1.0 2000.0 1.0 5000.0 0.0
medtodepwat4
depth
20.0
0.0
50.0
1.0
medtodepwat3
depth
20.0
0.0
50.0
1.0
65.0 1.0
105.0 0.0
awayfromriver rivdist 10000.0
0.0 25000.0
1.0
warmtohot
temp
18.0
0.0
20.0
1.0
28.0 1.0 33.0 0.0
temptowarm
temp
12.0
0.0
14.0
1.0
20.0 1.0 22.0 0.0
slow_growth
growth
0.0
0.0
5.0e-4
1.0
v_slow_growth growth
0.0
0.0
4.0e-5
1.0
vv_slow_growth growth
0.0
0.0
1.0e-5
1.0
*
# rules
coal
= slow_growth
= warmtohot and awayfromriver and vlittlesed and
highexposure and shallow
green_algae = slow_growth
= temptowarm and awayfromriver and shallow
zoo_benthos = slow_growth
= cool and mediumdepth
*
##################################################################
# Optional parameters section. Defaults will be used if not entered
###############################################################
#-------------------------------------------------------ACCURACY FACTOR
# accuracy determines to what percentage accuracy the solution is solved to.
# importantly a small accuracy does not necessarily lead to longer runtimes
# as the solution stays more stable recommended=0.001 maximum=0.01
0.001
#-----------------------------------------------------------------------BOUNDARY
#specify the boundary types for the coarse grid. (optional)
# 0 = regular boundary 1= insert a wall to prevent sediment and fluid loss
# without this section the default is regular boundaries
# North South East West
0
0
0
0
#-------------------------------------------------------DENSITIES
# Water densities
(optional)
# fresh water 1000.0 kg/m3, sea water with 30000ppm NaCl 1027 kg/m3
# density of fluid entering the system [kg/m3] sea density [kg/m3]
1015.0
1027.0
#---------------------------------------------------------PARAMETRIC SAMPLING INTERVAL
#
(optional)
#
# This should be seen in relation to temporal resolution - ie. think aliasing
# Sampling interval for sea-level and tectonics [y]
100.0
#---------------------------------------------------------SLOPE ANGLES
# Define maximum slope per grain size
(optional)
#
#tg(1.0)=0.017; tg(2.0)=0.035
#
# a rough guide to appropriate slopes derived from deltas around the world:
# slope(deg)=0.4+0.5log(sand/shale ratio)
#
# Example slopes:
# a. based on sand/shale ratio for ratios 0.2-0.8 - use Sabesi equation :
#
slope (gradient) = tan(0.4 + 0.52 log(sand/shale ratio))
# b. based on median grain size #
from Dean(1983) quoted in Olsen 1990 p.38 (NTH Diplom)
#
h(x) = Ax^m
# where :
#
A =0.24 + 0.254*log(d50mm)
#
m= 2/3
# Modified by Griffiths (1993) to agree more closely with
Page 25 / 22
#
Short(1979)'s observations as below.
#
(Short noted that 0.5mm+ gave 5-6deg, 0.25-0.5mm gave between 1.5-5.5,
# and <0.25 mm gave less than 1.5deg)
# Therefore to give a slope in degrees from a grain size
# between 0.1 and 50 mm use
#
Slope(deg) = atan(((0.28 + 0.23*log(d mm))*100^(2/3))/100)
#or
#
Slope(gradient) = ((0.28+ 0.23*log(d mm))*100^(2/3))/100
#
# Max. slope of four grain sizes below sea level (dz/dx)
# Max. slope of four grain sizes above sea level (dz/dx)
# Max. slope of four reworked grain sizes below sea level (dz/dx)
0.05 0.03 0.02 0.01
0.0001 0.0001 0.0001 0.0001
0.005
0.004
0.003
0.0005
# max slope carb grains below sea level (dz/dx) 2 grains
# max slope carb grains above sea level (dz/dx) 2 grains
0.005 0.004
0.0001 0.0001
# Minimum slope (dz/dx)
# Slope module calling interval [years]
0.0001
100.0
#----------------------------------------------------------SLOPE PARAMETERS
# Parameters for calculating equilibrium slope
(optional)
#
# Number of diffusion cycles during one pass
# Maximum number of iterations per diffusion cycle
# Diffusion residual [m]
4 1000 0.0001
#-------------------------------------------------------SEDIMENT TRANSPORT PARAMETERS
# Limiting factors for sediment transport
(optional)
#
# Sedimentation time step factor (sedimentation time step =
#
flow time step * sedimentation time step factor)
# Maximum depth of fluid elements
[m]
# Minimum velocity of fluid elements [m/s]
# Minimum ratio of sediment load fluid element to average sediment
# load at source
[kg/m3]
# Basement hardness factor
1.0e4
1.0
0.05
0.10
1.0E2
#---------------------------------------------------------MANNING
# Manning's coefficients
(optional)
#
# Coefficient for open-channel flow
# Coefficient for hyperpycnal flow
# Coefficient for hypopycnal flow
# Coefficient for debris flow
#default: 0.020
0.010
0.070 0.080
0.020
0.010
0.070 0.080
#-------------------------------------------------------------POROSITY TABLE
# Porosity function
(optional)
#
# Number of entries in effective pressure look-up table
6
# Effective pressure look-up table [MPa]
0.0
10.0 20.0 30.0 40.0 50.0
# Number of entries in fine-to-coarse-ratio look-up table
12
# Fine-to-coarse-ratio look-up table
0.0
0.05 0.10 0.15 0.20 0.25 0.30 0.40 0.50 0.65 0.85 1.0
# Porosity look-up table
# must have the size of (pressures*ratios)
# rows: constant fine-to-coarse ratio
# columns: constant effective pressure
0.39 0.36 0.35 0.34 0.33 0.32
0.36 0.33 0.31 0.30 0.295 0.29
0.34 0.31 0.28 0.27 0.26 0.25
0.335 0.28 0.23 0.22 0.21 0.20
0.35 0.25 0.21 0.19 0.18 0.17
0.36 0.26 0.20 0.18 0.16 0.14
0.39 0.27 0.21 0.17 0.15 0.13
Page 26 / 22
0.43
0.48
0.53
0.58
0.61
*
#
#
#
#
#
#
#
#
0.31
0.34
0.39
0.44
0.47
0.24
0.27
0.31
0.35
0.37
0.18
0.22
0.24
0.27
0.29
0.16
0.18
0.21
0.22
0.24
0.12
0.14
0.17
0.19
0.20
Page 27 / 22
82.1
77.3
73.8
71.2
66.8
59
47
33.9
25.5
19.3
13.5
10.8
8.4
5.8
3.8
-1
-5.1
-18.1
-18.1
-18.1
-18.1
-18.1
-20.4
-64.3
-98
Page 28 / 22
-0.5
-0.4
-1.8
-2.1
-3.1
-1.0
0.0
0.3
0.1
-0.1
0.6
-1.4
-0.8
-1.4
-0.7
-0.1
-1.1
0.4
0.2
0.3
-2.3
-1.9
-2.3
-2.8
-2.3
-0.4
0.3
0.8
-0.4
-1.3
-1.7
-2.6
-3.8
-4.0
-0.6
-1.5
-1.4
-3.1
-3.2
-3.7
-5.2
-4.8
-5.5
-3.3
Page 29 / 22