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The construction of carbocyclic nucleosides with a fixed 3E ring pucker in the Southern hemisphere of the
pseudorotational cycle is achieved from a common precursor carbocyclic amine, (1S,3S,4R,5S)-3benzyloxy-4-benzyloxymethyl-1-aminobicyclo[3.1.0]hexane 20. This carbocyclic amine is efficiently
assembled from optically pure 2-benzyloxymethylcyclopent-3-enol 11 in ten steps. The key
cyclopropanation step is performed on (3R,4S)-1-cyano-4-benzyloxy-3-(benzyloxymethyl)cyclopentane 15,
and proceeds regio- and stereo-selectively to give the critical cyanocarbocyclic intermediate 17 from which
the amine 20 is subsequently obtained. Synthesis of the pyrimidine analogues 68 is accomplished via the
intermediate acyclic acryloylureas 21 and 22. Preparation of purines 9 and 10 required prior N-formylation
of the corresponding 4,6-dichloro-5-aminopyrimidine and 4,6-dichloro-2,5-diaminopyrimidine
heterocyclic precursors for efficient coupling with amine 20. Except for (S)-29-deoxy-methanocarba-A (9, the
29-deoxyadenosine analogue), all Southern conformers appear to be devoid of antiviral activity.
Introduction
Carbocyclic nucleosides built on a bicyclo[3.1.0]hexane template have a rigid pseudosugar ring that results in compounds
with either a fixed Northern 2E (C29-exo) or Southern 3E (C39exo) conformation, as defined in the pseudorotational cycle,1
depending on the disposition of the base and the hydroxymethyl group. Syntheses of the Northern rigid conformers bearing all common bases (15) have been accomplished recently,2
Synthesis
One of the virtues of the method of synthesis of 6 7 was that it
was centred around the stable carbamate derivative 19 of the
parent carbocyclic amine 20, from which all the heterocyclic
bases could be constructed (Scheme 1). The procedure to obtain
Scheme 1
and among these, the thymidine [(N)-methanocarba-T, 1],2,3 29deoxycytidine [(N)-29-deoxy-methanocarba-C, 3] 4 and 29-deoxyadenosine [(N)-29-deoxy-methanbocarba-A, 4] 5 analogues have
shown exceptional antiviral activities. Among the corresponding pseudorotational antipodes, only the Southern thymidine
analogue 6 [(S)-methanocarba-T] has been reported,6,7 and a
recent comparison between 1 and 6 revealed that the latter was
devoid of the strong antiherpetic activity characteristic of 1.2 In
an effort to expand the scope of our investigation to the rest of
the Southern conformers, we now describe their syntheses,
which are based on a novel approach that was briefly communicated earlier for the thymidine analogue 6.7
1073
Scheme 3
Scheme 2
methoxy-2-methylacryloyl isocyanate and 3-ethoxyacryloyl isocyanate, respectively.12 Removal of the benzyl ethers by either
catalytic transfer hydrogenation, or by treatment with BCl3,
afforded the pyrimidine targets (S)-methanocarba-T 6 and (S)29-deoxy-methanocarba-U 7. Fashioning the carbocyclic cytidine 25 from the uridine analogue 24 was achieved via aqueous
ammonia hydrolysis of the corresponding triazole intermediate,
which was prepared according to published methodology.13
Removal of the protective benzyl ethers from 25 gave the target
(S)-29-deoxy-methanocarba-C 8.
The purine bases in 7 and 10 were also assembled from
carbocyclic amine 20 according to Scheme 3. Noteworthy is
the fact that displacement of chloride from either 5-amino-4,6dichloropyrimidine or 2,5-diamino-4,6-dichloropyrimidine with
20 occurred very poorly or not at all. However, excellent results
were obtained after conversion of the pyrimidines to their
respective formyl or diformyl derivatives to give 26 and 29. An
improvement in the efficiency of coupling of these bases upon
formylation has been reported, and their preparation was performed as described.14 Closure of the imidazole ring of 26 was
achieved by reaction with triethyl orthoformate and hydrochloric acid to afford the 6-chloropurine derivative 27. Sub-
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Antiviral activity
Table 1 reveals an almost complete lack of antiviral activity for
all Southern conformers, save for (S)-29-deoxy-methanocarbaA 9, whose anti-HCMV potency is slightly better than that of
its Northern pseudorotational antipode, (N)-29-deoxymethanocarba-A 4.5 Indeed, the EC50 value against HCMV for
(S)-29-deoxy-methanocarba-A 9 in the plaque reduction assay
was 2.4 g ml21 (SI > 41.7, Table 1) versus an EC50 of 5.6 g ml21
(SI > 17.9) measured for (N)-29-deoxy-methanocarba-A 4.5 This
selective anti-HCMV activity of 9 is unusual and will be the
subject of a future investigation. In general, the antiviral results
reported here are preliminary and will be expanded to include
other viruses. It is expected that as we gather more data, we will
be able to draw important conclusions regarding the relationship between a fixed pseudosugar pucker and antiviral activity.
These forthcoming results should be useful in the design of
more potent and specific antiviral agents.
Experimental
All chemical reagents were commercially available. Melting
points were determined on a Mel-Temp II apparatus, Laboratory Devices, USA, and are uncorrected. Column chromatography was performed on silica gel 60, 230400 mesh (E.
Merck) and analytical TLC was performed on Analtech Uniplates silica gel GF. Proton and 13C NMR spectra were
recorded on a Bruker AC-250 instrument at 250 and 62.9 MHz,
respectively. J Values are given in Hz. Spectra were referenced
to the solvent in which they were run ( 7.24 for CDCl3)
HSV-1
HSV-2
HCMV
HSV-1
HSV-2
HCMV
HSV-1
HSV-2
HCMV
HSV-1
HSV-2
HCMV
HSV-1
HSV-2
HCMV
EC50 b
g ml21
>50 f
>50 f
>20
>20
>20
>100
>4.0
>4.0
88.9
>100
>100
2.4 f
>20
>20
>20
CC50 c
g ml21
>50
>50
70.5
59.1
59.1
>100
14.9
14.9
>100
>100
>100
>100
75.0
75.0
>20
SI d
1
1
<3.5
<3.0
<3.0
1
<3.7
<3.7
>1.1
1
1
>41.7
<3.7
<3.7
1
Control e
(EC50 g ml21)
ACV (0.15)
ACV (0.60)
GCV (0.20)
ACV (0.20)
ACV (1.80)
GCV (0.01)
ACV (0.20)
ACV (1.80)
GCV (0.30)
ACV (0.20)
ACV (0.20)
GCV (0.20)
ACV (0.20)
ACV (1.80)
GCV (0.01)
1075
1076
1077
(1S,3S,4R,5S)-3-Hydroxy-4-hydroxymethyl-1-(6-aminopurin-9yl)bicyclo[3.1.0]hexane 9
A solution of 28 (0.026 g, 0.06 mmol) in CH2Cl2 (3 cm3) was
treated with BCl3 (1 in CH2Cl2; 500 mm3) and deblocked in
the same manner as 24 and 25. The crude yellow solid was
recrystallized from MeOHCH2Cl2 to give the target com25
pound 9 (0.014 g, 93%) as a white powder; mp 282285 8C; []D
21
230.0 (c 0.2 in MeOH); max(KBr)/cm 3650, 3620, 1627 and
1593; H(D2O, Me4Si) 8.30 (1 H, s, 89-H), 8.22 (1 H, s, 29-H),
4.22 (1 H, d, J 6.8, 3-H), 3.72 (2 H, d, J 5.9, CH2O), 2.41 (1 H,
ddd, J 14.2, 7.0, 1.9, 2-H), 2.20 (1 H, d, J 14.2, 2-H), 2.10 (1
H, t, J 5.9, 4-H), 1.90 (1 H, dd, J 9.5, 4.8, 5-H), 1.481.34 (2 H,
m, 6-H); C(CDCl3) 18.47 (6-C), 27.21 (5-C), 42.06 (2-C), 44.25
(1-C), 52.45 (4-C), 64.59 (CH2OH), 75.30 (3-C), 145.05 (89-C),
146.43 (29-C); m/z (FAB) (relative intensity) 262 (MH1, 100),
136 (B 1 2 H, 25) (Found: C, 47.86; H, 5.39. C12H15N5O2?
2.25H2O requires C, 47.75; H, 5.75%).
(1S,3S,4R,5S)-3-Benzyloxy-4-(benzyloxymethyl)-1-(2formamido-6-chloropurin-9-yl)bicyclo[3.1.0]hexane 30
A solution of carbocyclic amine 20 (0.165 g, 0.510 mmol), 4,6dichloro-2,5-diformamidopyrimidine 14 (0.132 g, 0.561 mmol)
and N,N-diisopropylethylamine (0.358 cm3, 2.053 mmol) in dry
1,4-dioxane (10 cm3) was stirred at room temperature for 12 h
and then refluxed for 30 min. The solvent was evaporated to
dryness under reduced pressure and the residue was purified by
column chromatography [silica gel, hexanesEtOAc, 2 : 1 (100
cm3) and hexanesEtOAc, 1 : 1 (200 cm3)] to give intermediate
29 (0.194 g, 73%) as a white solid, which was used without
further purification in the following step. A solution of 29
(0.194 g, 0.372 mmol) in diethoxymethyl acetate (7 cm3) was
stirred at 140 8C under argon for 15 h. The mixture was cooled
to room temperature and treated with MeOH (6 cm3) and concentrated aqueous ammonia (0.5 cm3) while stirring was continued. The solvent was evaporated to dryness and the residue
was dissolved in EtOAc (50 cm3) and extracted with water
(2 30 cm3) until neutral pH of the washings was obtained.
The organic layer was dried (MgSO4), filtered and evaporated
to dryness. The resultant yellow solid was purified by flash
chromatography (silica gel, hexanesEtOAc mixtures, 19 : 1, 7 : 3
and 1 : 1) to give compound 30 (0.100 g, 53%) as a yellowish
24
226.7 (c 0.46 in CHCl3); max(KBr)/
solid; mp 171173 8C; []D
21
cm 3210, 3063, 2924, 1794 and 1598; H(CDCl3, Me4Si) 9.45
(1 H, d, J 10.5, HCONH), 7.98 (1 H, s, 89-H), 7.91 (1 H, d, J
10.5, HCONH), 7.457.20 (10 H, m, ArH), 4.61 (2 H, s, PhCH2O), 4.45 (2 H, s, PhCH2O), 4.05 (1 H, br t, J 3.3, 3-H), 3.70
(2 H, m, CH2O), 2.53 (1 H, t, J 6.1, 4-H), 2.43 (2 H, br d, J 4.3,
2-H), 1.81 (1 H, dd, J 9.6, 4.8, 5-H), 1.71 (1 H, t, J 5.2, 6-Hendo),
1.34 (1 H, dd, J 9.5, 5.7, 6-Hexo) (Found: C, 64.33; H, 5.27; N,
13.92. C27H26ClN5O3 requires C, 64.35; H, 5.20; N, 13.90%).
(1S,3S,4R,5S)-3-Benzyloxy-4-benzyloxymethyl-1-(2-amino-6oxo-1,9-dihydro-6H-purin-9-yl)bicyclo[3.1.0]hexane 31
A solution of compound 30 (0.087 g, 0.172 mmol) in formic
acid (4 cm3) was refluxed for 2 h. After cooling to room temperature, the solvent was evaporated under reduced pressure.
The residue was dissolved in MeOH (6 cm3), treated with concentrated aqueous ammonia (5 drops) and stirred at 40 8C for 1
h. The solvent was evaporated and the resulting oil was purified
by column chromatography [silica gel, EtOAc (50 cm3), followed by 5% MeOHEtOAc (100 cm3), followed by 10%
MeOHCHCl3 (50 cm3)] to give compound 31 (0.074 g, 94%) as
24
221.7 (c 0.47 in Me2SO);
a white solid; mp 248250 8C; []D
max(KBr)/cm21 35883165, 2925, 1751 and 1600; H([2H]6DMSO, Me4Si) 10.56 (1 H, br s, NH), 7.51 (1 H, s, 89-H), 7.35
7.22 (10 H, m, ArH), 6.40 (2 H, br s, NH2), 4.57 (2 H, s,
PhCH2O), 4.42 (2 H, AB q, J 12.2, PhCH2O), 3.96 (1 H, m, 3H), 3.68 (2 H, br d, J 6.8, CH2O), 2.502.30 (3 H, m, 4-H, 2-H),
1.76 (1 H, dd, J 9.3, 4.6, 5-H), 1.37 (1 H, t, J 5.0, 6-Hendo), 1.23
Acknowledgements
The authors thank Dr Christopher K.-H. Tseng, NIAID, NIH
for arranging the biological tests and Dr James A. Kelly of the
Laboratory of Medicinal Chemistry (LMC) for mass spectral
data. Antiviral testing was performed by Dr Earl Kern of the
University of Alabama at Birmingham and was supported by
USPHS Contract N01-AI-35177 from the National Institute of
Allergy and Infectious Diseases, NIH.
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1078
Paper 6/04352F
Received 24th June 1996
Accepted 24th October 1996