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STEREOCHEMISTRY
- Isomers constitutional isomers, E/Z isomerism, stereoisomers, enantiomers,
diastereoisomers.
- Dotted line/wedge notation
- Chirality
- R and S descriptors
- Conformaion, staggered and eclipsed, axial and equatorial
- Newman projections
ALKENES
- Geometrical Isomerism, cis and trans, Z/E-Descriptors
- Additions reactions (Hydration , reactions with halogens and hydrogen halides
, Hydroboration , Hydrogenation and Epoxidation
- Dienes: Addition reactions and Diels Alder reactions
ALKYNES
- Addition reactions
- Acidity
Hunds rule says that each degenerate orbital 2p x, 2py and 2pz, must FIRST
RECEIVE ONE ELECTRON BEFORE ANY OF THE ORBITALS CAN RECEIVE A SECOND
ELECTRON
- Orbitals are described by quantum numbers these must be unique for each
orbital
An atomic orbital is defined by a unique set of three quantum numbers (n, l
and ml). A fourth quantum number ms gives information about the spin of an
electron in an orbital and specifies how many electrons can occupy that orbital.
>> Principal Quantum Number (n): n = 1,2,3
- This specifies the energy of an electron and the SIZE of the orbital. The
principal quantum number may have any positive integral value between 1 and
infinity. All orbitals that have the same value of n are said to be in the same
SHELL (level).
>> The Orbital, or Angular Momentum Quantum number (l)
- The quantum number l is called the orbital quantum number. For a given value
of the principal quantum number, the allowed values of l are positive integers
lying between 0 and (n-1). Therefore is n=3, the permitted values of l are
0,1 and 2. Each value of l corresponds to a particular type of atomic orbital. The
value of l provides information about the shape of the orbital and the angular
momentum of the electron within the orbital
n=1 l=0
n=2 l= 0,1
n=3 l = 0,1,2
n=4 l = 0,1,2,3,
>> The Magnetic Quantum Number (ml): ml = -l,.,0,.,+l
- The magnetic quantum number m1 relates to the directionality of an orbital and
has values which are integers between +l and l. If l=1, the allowed values m1
are -1, 0 and +1.
>> The Electron Spin Quantum Number (ms): ms = + or
- This specifies the orientation of the spin axis of an electron, up or down arrows.
No two electrons can have a set of identical quantum numbers. Each orbital
can accommodate two electrons, one of each and opposite spins.
Deriving quantum numbers and shit.
1) Derive possible sets of quantum numbers for n=2, and explain the
significance of these sets of numbers
- Let n=2
i) Remember that a value of n defines an energy or principal level.
ii) Possible values of l lie in the range of 0 to (n-1). Therefore for n=2, l = 0 and 1
iii) This means that the n=2 level gives rise to two sub levels, one with l=0 and
one with l=1
iv) Now determine the possible values of the quantum number m l. We know
values of ml lie in the range l0+l
The sub level l=0 has associated with it ONE value of m l
ml = 0 for l=0
The sub level l=1 has associated with it THREE values of m l
ml = -1, 0 or +1 for l=1
The possible sets of quantum numbers for n=2 are
N
2
2
2
L
0
1
1
ml
0
-1
0
2
1
+1
Total of 4 orbitals in second energy level, it can accommodate 8 electrons. 2 in
the 2s orbital and 6 in the 2p orbitals
- The physical meaning of these sets is that for the level n=2, there will be two
types or orbital (because there are two values of l). For l=1, there will be three
orbitals all of similar type but with different directionalities.
This is a
representation of the 1s orbitals of two hydrogen atoms forming a bonding
molecular orbital. In a bonding molecular orbital two or more in-phase orbitals
overlap to form a bond
An out-of-phase overlap forms and ANTIBONDING MOLECULAR ORBITAL. With
an out-of phase overlap, a node develops between the two nuclei. For each
bonding molecular orbital that forms, an antibonding molecular orbital
also forms.
iii) sp3 in sp3 hybridisation FOUR orbitals are involved, one s and three p orbitals
- Because hybridisation blends all the characteristics of the s and p orbitals, the
name of the new orbital indicates what PROPORTION of each orbital is like an s
orbital and what portion is like a p orbital. With sp 2 hybridisation each hybrid
orbital bears 33.3% of the s orbitals characteristics and 66.6% of the p orbitals
characteristics.
Another consideration with hybridisation is the shape of the hybridised orbitals.
The FOUR hybrid sp3 orbitals have a shape that is a combination of the s and p
- Similar to p orbitals, each sp 3 orbital (there are four of them) has two lobes, but
unlike the p orbitals they are of UNEQUAL size. This means that for each orbital
there is a greater electron density on one side of the nucleus than on the other.
This unsymmetrical electron density allows for greater overlap and the formation
of STRONGER BONDS than is possible with an unhybridised orbital.
What happens to the sp2-orbitals on the C atom? They overlap END-ON forming a
SIGMA BOND
And the p orbitals? They overlap SIDE-ON giving a PI BOND
LONE PAIRS
- Let us look at the oxygen atom in a carbonyl group
Carbon has hybridisation of sp2
Oxygen has:
1 x sigma bond hybrid
1 x pi bond p orbital
2 lone pairs hybrids.
Total of 3 hybrid orbitals on the oxygen, must be
sp2
What about the oxygen in furan?
- It also has two lone pairs
In furan the oxygen has:
2 x sigma bonds 2 hybrids
0 x pi bonds 0
2 x lone pairs 1 hybrid and 1 p-orbital
3 hybrids therefore must be a sp2 oxygen
HYBRIDISATION RULES
1) sigma bonds are formed from HYBRID orbitals
2) pi bonds are formed from p-orbitals
3) lone pairs that can form pi bonds in alternative structures are in p and hybrid
orbitals
4) lone pairs that cannot form pi bonds in any alternative structure are in hybrid
orbitals
RESONANCE
- Alternative ways of drawing molecules that still satisfy the octet rule. The real
structure is an average of all the possible resonance structures. Some structures
may contribute more than others if they are MORE STABLE
RULES FOR RESONANCE STRUCTURES
-Only pi bonds and LONE PAIRS can move
-You CANNOT break sigma bonds
- The connectivity must not change.
Summary
Atomic Orbitals
- Determined for the hydrogen atom
-Level 1 has only 1 s-orbital
-Level 2 has 1 x s and 3 x p orbitals
Hybridisation
- Same number of hybrids out as atomic orbitals in
- Always use an s-orbital and however many o-orbitals
required
- sigma bonds ALWAYS hybrid, pi ALWAYS p-orbitals, lone
pairs either
Hybridisation and shape
- sp3 is TETRAHEDRAL
-sp2 is TRIGONAL PLANAR
- sp is LINEAR
Reactions of alkyhalides
- The halide ion is a good leaving group so it is easily substituted by nucleophiles.
Because the mechanism goes through a carbocation, the leaving group must
be attached to either a tertiary or secondary carbon to stabilise the intermediate.
A methyl or primary leaving group will NOT form a carbocation
DECIDING
SN2 AND
- SN1
involves formation of a carbocation intermediate
- Stabalising the intermediate favours an Sn1 mechanism
BETWEEN
SN1
mechanism
- This spreads the positive charge over the entire molecule, rather than keeping
it on one atom. If the carbocation is primary there will only be one electrondonating alkyl group. If it is secondary, there will be two, tertiary there will be
three. The more electron donating groups present, the more stable the ion will
be.
LEAVING GROUPS
Halide X
F
Cl
Br
I
- Reactions are easier if we
pKa of HX
+3
-7
-9
-10
can protonate the alcohol to make the leaving group water, so that we can then
substitute the OH for our choice of halogen
ELIMINATION REACTIONS
E2 REACTIONS
- The term E2 stands for elimination bimolecular. E2 eliminations, in contrast to
E1 mechanisms are PROMOTED BY A STRONG BASE. The base is VITAL to the
reaction; it is directly involved in the RATE-DETERMINING step. The reaction is
BIMOLECULAR because TWO MOLECULES must come together for the reaction to
E2 mecanism:
- Remember the base attacks the NEIGHBOROUGHING C-H bond and removes
the H at the SAME TIME the alkene double bond starts to form and the SAME
TIME the X group starts to leave. THREE ARROWS.
Rate = k[R-X][Base]
Stereochemistry Of Elimination reactions
- Elimination is antiperiplanar.
It is the staggered arrangement,
aligning two sigma bond that become the pi bond.
E1 REACTION MECHANISM
Requirements
i) strong base
ii) Moderate or better LEAVING GROUP
III) Antiperiplanar H-C-C-LG
S N2
i) NOT TERTIARY
ii) Good leaving group
iii) Good nucleophile
iv) Polar solvent
E1/SN1
i) STABLE carbocation
ii) Moderate or better leaving group
iii) Polar solvent
iv) hydrogen (for E1). Hydrogen bond
adjacent to the carbon bearing the
leaving group
Because E1 and SN1 share the same rate determining step and both involve
the production of a carbocation intermediate, it is generally understood than
GRINGARD REAGENTS
A Grignard reagent has the formula RMgX where X is a halogen and R is an alky
or aryl(based on a benzene ring) group.
- A typical gringard reagent might be CH 3CH2MgBr
The Preparation Of A Grignard reagent
Grignard reagents are made by adding the AKLHALIDE or halegenoalkane to
SMALL BITS OF MAGNESIUM in a flask containing ethoxyethane.
Bromoethane + Magnesium
Ehylmagnesium Bromide
Grignard reagents are very STONG BASES. One of their most common uses is in
their reaction wih aldehydes and ketones to form ALCOHOLS.
Constitutional Isomers
Constitutional isomers have different atoms connected to different things, they
have the same structural formula though. They are also called STRUCTURAL
ISOMERS.
Example Compare ethers(where two hydrocarbon groups are linked by an
oxygen atom, ROR)with alcohols
Stereoisomers
- Stereoisomers have the same STRUCTURAL FORMULA AND CONNECTIVITIES,
but the structures CANNOT BE SUPERIMPOSED UPON ONE ANOTHER
They have the SAME CHEMICAL PROPERTIES They undergo the same
reactions mostly with identical rates. But they have DIFFERENT PHYSICAL
PROPERTIES for instance they have different MELTING AND BOILING POINTS,
fluidity etc.
Geometric Isomers
Geometric isomers result most commonly from carbon-carbon double bonds.
The important property is the INABILITY OF THE CARBON ATOMS TO ROTATE
RELATIVE TO ONE ANOTHER ABOUT THE DOUBLE BOND. The molecules have
identical connectivitys so they cannot be described as structural isomers
- These isomers used to be called cis and trans isomers but not anymore. We
now use E and Z notation:
E Entgegen = opposite
Z Zusammen = together
HOW TO DECIDE E AND Z
You assign properties based on atomic number and consider each end of the
double bond separately
1) Take each end of the double bond separately
2) Consider the FIRST atom in each chain
3) Chain which has the highest atomic number is the highest priority
4) If highest priority is on the SAME SIDE of the double bond then it is Z. If it is on
the OPPOSITE SIDE OF THE DOUBLE BOND then it is E
ASSIGNING CHIRALITY
In order to assign the configuration as R or S, identify each of the chirality
centers (most commonly an sp3C with 4 different groups attached
Then at each chirality centre
Assign the priority (high=1 to low=4) to each group attached to the chirality
center based on atomic number.
Reposition the molecule so the LOWEST PRIORITY GROUP is away from you
Determine the relative direction of the priority order of the three higher priority
groups ( 1 to 2 to 3)
If this is CLOCKWISE then it is the R-STEREOISOMER (Latin; rectus = right
handed)
If this is ANTICLOCKWISE then is the S-STEREOISOMER (Latin; sinister = left
handed)
MESO COMPOUNDS
If we can make an enantiomer superimposable on its own mirror image by
rotating it then it is NOT an enantiomer. A compound like this is called a meso
compound. /
- Because it is superimposable upon its mirror image, it is NOT optically active,
even though it has two (or more) stereogenic carbon atoms
Another to detect a meso compound is to look for a plane of symmetry within
the molecule. This is particularly easy with Fischer projections. If the bottom half
is a mirror image of the top half, then we have a meso compound.
CONFORMATION
Although single bonds can rotate freely, not all positions are equally preferred.
- With cyclic molecules, EQUATORIAL is more stable than ANXIAL. Things that are
in the axial position are more crowded.
ALKENES AND ALKYNES: Addition Reactions
Alkenes
Alkenes are unsaturated hydrocarbons. They contain:
- Only Hydrogen and carbon
- At least one carbon-carbon double bond
- Sigma bonds and Pi bonds
- No lone pairs!
- sp3 and sp2 hybridised carbons
The general formula for alkenes is CnH2n
Geometric Isomers
- These are alkenes, they form on the basis of limited rotation around a carboncarbon double bond.
FORMATION OF ALKENES
1) Elimination from alkylhalides
Example
- The mechanism of the Wittig reaction is not fully established, but a simple
version is given below. The initial step is the nucleophilic addition of NEGATIVELY
CHARGED carbon of YLIDE onto the carbonyl carbon to give a betaine, which can
cyclise to give an oxaphosphetane as an intermediate. The oxaphosphetane is
decomposed to give an alkene and a phosphine oxide.
- The driving force of the Witting reaction is the FORMATION OF THE HIGHYLY
STABLE DOUBLE BOND BETWEEN PHOSPHORUS AND OXYGEN IN PHOSPHINE
OXIDE
Addition To Alkanes
This is an electrophilic mechanism and proceeds via a carbocation intermediate
i) Adds positive component first
ii) Generates the MOST STABLE carbocation as the intermediate
TO DETERMINE THE MECHANISM
1) Identify the + end of the REAGENT
2) This is then attacked by the -electrons of the double bond
3) To generate the most substituted carbocation
4) The resulting anion (negatively charged ion) forms a bond to the
carbocation
SOME SPECIFIC EXAMPLES
Step 1: The - electrons of the double bond act as a NUCLEOPHILE and are
attracted to the bromine molecule (because of the INDUCED DIPOLE between BrBr). This forms a BROMONIUM INTERMEDIATE
Step 2: Attack of the nucleophilic bromide form the side AWAY from the
bromonium centre of the cyclic molecule in an SN2 like fashion opens up the
bromonium ion to
give overall trans
addition.
2. ALKENES ALCOHOLS
e.g. H2O in dilute acid (Essentially H3O+) This is a REVERSIBLE reaction.
http://www.ochem4free.info/YQcr3l7Abrssp/01-Atoms.pdf
http://www.angelo.edu/faculty/kboudrea/general/quantum_numbers/Quantum_Nu
mbers.htm
http://www.smallscalechemistry.colostate.edu/PowerfulPictures/Orbitals.pdf
http://www.personal.psu.edu/the1/e2.htm
http://www.chem.ucalgary.ca/courses/350/Carey5th/Ch05/ch5-5.html e2
http://www.lasalle.edu/~price/Electrophilic%20Addition%20Reactions.pdf
electrophilic addition
http://www.chem.ucalgary.ca/courses/350/Carey5th/Ch14/ch14-4-6.html
oxymercurication mechanism
http://www.chem.ucalgary.ca/courses/350/Carey5th/Ch15/ch15-3-3.html alkenes
to diols
http://www.youtube.com/watch?v=WwTCf-bv1SQ epoxination of alkenes