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INTRODUCTION
1.1 Diabetes:
Diabetes is a disease in which the body is unable to regulate blood
sugar on its own. And it does not produce or properly use insulin, which
is a hormone that is needed to convert sugar, starches and other food
into energy needed for daily life. Although both genetics and
environmental factors such as obesity and lack of exercise appear to
play a role, the actual cause of diabetes still remains unknown. There
are two major types of diabetes, called type 1 and type 2.
Type 1 diabetes: A chronic disease in which high levels of sugar
(glucose) are found in
affecting the insulin producing beta cells in the pancreas, is the main
disorder in type 1 diabetes. For essentially, if someone is resistant to
insulin, the body can, to some degree, increase production of insulin
and overcome the level of resistance.
3
Public Health showed that the single best predictor of type 2 diabetes
is being obese or overweight.
Impaired
glucose
tolerance
or
impaired
fasting
Ethnic
background. Diabetes
Hispanic/Latino
Americans,
occurs
more
African-Americans,
Native
often
in
Americans,
as
140/90
mm
Hg
or
higher.
Low
levels
of
HDL
"good" cholesterol and high triglyceride levels also put you at risk.
Enzymatic
Product(s
defense systems
Leakage of electrons
Superoxide
H2O2 + O2
dismutase (SOD)
molecul
Main sources
e
Supero
xide
(O2)
transport chain
Superoxide
Activated phagocytes
H2O2
Xanthine oxidase
Flavoenzymes
bacteria)
From O2 via
superoxide dismutase
(SOD)
Glutathione
Hydroge
NADPH-oxidase
(neutrophils)
Hydroxy
l radical
(OH)
Glucose oxidase
Peroxiredoxins
Xanthine oxidase
(Prx)
H2O + O2
H2O
Nitric
oxide
GSSG
Catalase
peroxid
e (H2O2)
H2O +
peroxidase
synthases
Nitric oxide
Glutathione/TrxR
(NO)
GSNO
(II)
metallothionein,
(III)
(IV)
matrix. Most animal tissues contain both CAT and GSH-Px activity.
SODs are metal-containing proteins that catalyze the removal of
superoxide, generating water peroxide as a final product of the
dismutation. Three isoforms have been identified, and they all are
present in all eukaryotic cells. The copper-zinc SOD isoform is present
in the cytoplasm, nucleus, and plasma. On the other hand, the
manganese SOD isoform is primarily located in mitochondria. Dietary
micronutrients also contribute to the antioxidant defense system.
These include carotene, vitamin C, and vitamin E (the vitamin E family
comprises both tocopherols and tocotrienols, with _-tocopherol being
the predominant and most active form). Water-soluble molecules, such
as vitamin C, are potent radical scavenging agents in the aqueous
phase of the cytoplasm, whereas lipid soluble forms, such as vitamin E
and carotene, act as antioxidants within lipid environments. Selenium,
copper, zinc, and manganese are also important elements, since they
act as cofactors for antioxidant enzymes. Selenium is considered
particularly important in protecting the lipid environment against
oxidative injury, as it serves as a cofactor for GSH-Px. The most
abundant cellular antioxidant is the tripeptide, GSH(L-glutamyl -Lcysteinyl
glycine).
GSH
is
synthesized
in
two
steps.
First,
1.6 Catalase
Catalase was first noticed in 1811 when Louis Jacques Thnard, who
discovered H2O2 (hydrogen peroxide), suggested its breakdown is
caused by an unknown substance. In 1900, Oscar Loew was the first to
10
give it the name Catalase, and found it in many plants and animals.
Catalase gene located on the short (p) arm of chromosome 11 at
position 13. More precisely, the CAT gene is located from base pair
34,460,471 to base pair 34,493,606 on chromosome 11.
It is a ubiquitously occurring enzyme that catalyses the
decomposition of H2O2 to water and oxygen. The enzyme has one of
the highest turnover rates, converting millions of H 2O2 molecules per
single Catalase molecule each second. The enzyme is a tetramer with
polypeptide chains that are more than 500 amino acids long. Catalase
is usually determined in the serum.
Catalase
2H2O2
2H2O + O2
11
12
13
1.
2.
3.
2. REVIEW OF LITERATURE
protein
metabolism.
As
consequence
of
the
metabolic
physiological
processes
and
their
possible
therapeutic
The
status
of
Catalase
activity
in
erythrocytes
of
undergo
oxidative
stress,
that
elevated
glucose
-cells from glucose toxicity, and that lipotoxicity, to the extent it can
be attributable to hyperlipidemia, occurs only in the context of
preexisting hyperglycemia, whereas glucose toxicity can occur in the
absence of hyperlipidemia (R.Paul et al., 2004).
Overproduction or insufficient removal of these free radicals results in
vascular dysfunction, damage to cellular proteins, membrane lipids
and nucleic acids. Despite overwhelming evidence on the damaging
consequences of oxidative stress and its role in experimental diabetes,
large scale clinical trials with classic antioxidants failed to demonstrate
any benefit for diabetic patients. As our understanding of the
mechanisms of free radical generation evolves, it is becoming clear
that rather than merely scavenging
suffering
from
complications.
Therefore,
it
seems
19
Ciocalteau
reagent
which
consists
of
sodium
tungstate
21
Reagent Required:
1.
2.
3.
Sodium hydroxide
4.
Copper sulphate
5.
6.
Reagents Prepared:
Lowry A: 2% Sodium Carbonate anhydrous in 0.1M Sodium hydroxide.
(0.56g NaOH+2.86g Na2Co3 in 100 ml water).
Lowry B: 1% CuSo4 in distilled water ( 0.28g of CusO 4 in 20ml distilled
water).
Lowry C: Sodium potassium tartarate( 0.56g in 20ml of distilled
water).
Lowry stock reagent: 49ml of Lowry A + 0.5ml of Lowry B+ 0.5ml of
Lowry C
F.C reagent: Phenol reagent (2N) was diluted in water in 1:1 ratio.
To estimate the amount of protein in an unknown sample, we should
first prepare a standard graph using a known protein sample. We have
used Bovine serum albumin (BSA) as known sample to obtain the
standard graph.
22
200
400
600
800
1000
Water(l)
1.8
1.6
1.4
1.2
0.8
FC
200
200
200
200
200
200
reagent(l)
The serum was separated from the normal and diabetes patients
serum sample.
Lowry stock reagent of 1ml was taken in test tube. To the
reagent10l of serum sample was added which was present in
room temperature.
After incubation 200l of FC reagent was added. The test tubes
were kept for incubation at room temperature for another
30mins.
After incubation, 2ml of the mixture was taken in a cuvette to
read the OD value using spectrophometer at 595nm. wavelength
was used.
The above steps were repeated for all samples.
Reagents Prepared:
Phosphate buffer: Potassium di-hydrogen orthophosphate was mixed
with di-potassium hydrogen phosphate with pH maintained at 7.
Hydrogen peroxide solution: 30% H2O2 was diluted 10 times in
water (1 ml of H2O2 in 9ml water). This diluted solution is again diluted
3 times (1ml of diluted H2O2 in 2ml of water) bringing it to 1% solution
(30mM).
Catalase stock solution: 840 micro liter of H2O2 solution was added
in 299.160ml phosphate buffer and a stock of 300ml was prepared.
Procedure:
were added.
Serum sample of 10l was added to cuvette.
Adjusted the wavelength to 240nm and noted down the OD
values
using
the
time
scan
measurement
in
the
spectrophotometer.
Using the obtained OD values of protein and Catalase.
We found out the activity of the catalase enzyme by substituting
in the formula given below:
24
concentration
25
Materials Required:
1
2
3
4
Autoclaved eppendorff
Autoclaved micropipettes
Autoclaved micro tips
Autoclaved distilled water
Eppendorff stand
Preparation of Reagents :
26
Chemicals
(100ml)
(50ml)
Tris-HCL (10mM)
0.121
0.061
EDTA ( 2mM)
0.0744
0.0372
KCl
0.0745
0.03725
0.2033
0.10165
(10mM)
MgCl2 (10mM)
Table 4:
Chemicals
(100ml)
(50ml)
Tris-HCL (10mM)
0.121
0.061
EDTA ( 2mM)
0.0744
0.0372
27
KCl
(10mM)
0.0745
0.03725
MgCl2 (10mM)
0.2033
0.10165
NaCl (0.4M)
2.3376
1.1688
Amount
0.030 g
0.009 g
(1mm)
Procedure:
A sterilized eppendorff was taken and 300 l of blood sample was added in it.
To the blood sample 800 l of TKM1 and 1 drop of 100% Triton X 100 was
28
To the pale pellet, 300 l of TKM2 and 80 l of 10% SDS was added and
DNA pellet. Centrifuged at 10,000 rpm for 5 minutes and the pellet was air dried.
To the dried pellet, 50 l of TE buffer was added for hydration of DNA and
preserve at freezing temperature.
Materials Required:
1
2
3
4
Reagent Preparation:
10 x TAE Buffer (100) ml:
of
dissolved in 10ml distilled water. Gel loading solution and dye used was
6X concentrated and was obtained readymade.
Figure 7: Gel
Procedure:
Preparation of 1% agarose gels:
The flask was kept in a microwave oven and boiled until the agarose dissolved.
After boiling 7l of Ethidium bromide was added to the solution and was allowed
to cool, Poured into the gel-casting tray.
The comb was kept in place and the gel was allowed to solidify at room
temperature.
After solidification of the gel, the comb was removed and the gel was placed in
the electrophoresis chamber containing 1x TAE.
Now 4l of the DNA sample was mixed with 3l of loading dye and 7 l of
the mixture was loaded into the well.
Samples were run at 75 volts for 30 minutes, After 30 min DNA was visualized
under gel documentation system.
3.2.3 Spectrophotometer:
In chemistry, spectrophotometer is the quantitative measurement of
the reflection or transmission properties of a material as a function of
wavelength. It is more specific than the general term electromagnetic
spectroscopy in that spectrophotometer deals with visible light, nearultraviolet,
and
near-infrared,
but
does
not
cover time-resolved
Figure 8: Spectrophotometer
Because DNA and RNA absorb ultraviolet light, with a absorption peak
at 260nm wavelength, spectrophotometers are commonly used to
determine
the
concentration
of
DNA
in
solution.
Inside
32
Procedure:
280nm. 1 l of each
DNA sample of 1l each to 99 l TE (Tris-EDTA buffer) and mixed
well.
Now 2.9 ml of water was added to the cuvette.
TE buffer and water used as a blank in the other cuvette of the
spectrophotometer.
The OD260 and OD280 values on spectrophotometer were noted.
33
1 Denaturation at 94C :
During the denaturation, the double strand melts open to single
stranded DNA, all enzymatic reactions stop (for example: the extension
from a previous cycle).
34
2 Annealing at 54C :
The primers are jiggling around, caused by the Brownian motion. Ionic
bonds are constantly formed and broken between the single stranded
primer and the single stranded template. The more stable bonds last a
little bit longer (primers that fit exactly) and on that little piece of
double stranded DNA (template and primer), the polymerase can
attach and starts copying the template. Once there are a few bases
built in, the ionic bond is so strong between the template and the
primer, that it does not break anymore.
3 Extension at 72C :
This is the ideal working temperature for the polymerase. The primers,
where there are a few bases built in, already have a stronger ionic
attraction to the template than the forces breaking these attractions.
Primers that are on positions with no exact match, get loose again
(because of the higher temperature) and don't give an extension of the
fragment. The bases (complementary to the template) are coupled to
the primer on the 3' side (the polymerase adds dNTP's from 5' to 3',
reading
the
template
from
3'
35
to
5'
side,
bases
are
added
36
Because
both
strands
are
copied
during
PCR,
there
is
Volume
Water
18.3l
Buffer
2.5l
dNTPs
1l
Forward Primers
1l (20 pmol/l)
Reverse Primers
1l (20 pmol/l)
Taq Polymerase
0.2l
DNA sample
1l
37
Above content was mixed well gently by tapping. The amplification was
carried out in a thermo cycler for 30-35 cycles. After amplification,
amplified samples were analyzed using agarose gel electrophoresis.
Store the amplified samples were stored at freezing temperature for
further analysis.
conical flask.
The flask was kept in a microwave oven and boiled until the agarose dissolved.
After boiling 7l of ethidium bromide was added to the solution and was allowed
After solidification of the gel, the comb was removed and the gel was placed in
the electrophoresis chamber containing 1x TAE.
Now 5l of the PCR product was mixed with 3l of loading dye and loaded in to
the wells
38
200
400
600
800
1000
OD(595nm)
0.039
0.13
0.216
0.30
0.39
0.51
39
Glucose
level
mg/dl
76.106
Protein
concentration
mg/ml
0.21
40
OD at 240
nm
Catalase
activity
0.3252
2181.08
02
03
04
05
06
52.21
89
80
86
85
0.19
0.16
0.09
0.15
0.15
0.1941
0.2041
0.1201
0.1577
0.1392
1438.34
1901.46
1879.49
1480.75
1307.04
07
08
89
82
0.16
0.16
0.2160
0.1235
1796.65
2099.47
Glucose
level
mg/dl
Protein
concentration
mg/ml
OD at 240
nm
Catalas
e
activity
01
149.55
0.20
0.2062
1452.11
02
337
0.17
0.2200
1445.73
03
205
0.16
0.1109
976.23
04
139
0.16
0.2160
644.36
05
347
0.27
0.0701
365.67
06
139
0.16
0.2256
1985.91
07
152
0.15
0.2034
1909.85
08
193
0.20
0.1475
1549.29
was expressed as (Unit). The Correlation of enzyme activity with Glucose concentration
was measured as shown in Table 6 & 7 as well as histogram result shown the catalase
activity with respect to glucose concentration as shown in graph 3.
42
75v for 45 minutes. On gel documenting the gel we got nice band indicating the presence
of the DNA; as shown in the figure 16.
.
43
gel,
but
remaing
samples
showed
some
degree
of
44
A260
A280
Purity
Conc
Conc
No
1
2
3
4
5
6
7
8
0.114
0.131
0.132
0.122
0.119
0.133
0.140
0.121
0.064
0.070
0.069
0.062
0.066
0.074
0.068
0.068
1.8
1.8
1.9
1.9
1.8
1.79
2.0
1.77
g/ml
17100
19650
19800
18300
17850
19950
21000
18150
ng/ml
17.10
19.65
19.80
18.30
17.85
19.95
21.00
18.15
A260
0.367
0.304
0.281
0.290
0.261
0.344
0.384
A280
0.182
0.155
0.145
0.146
0.141
0.171
0.195
Purity
Conc
Conc
2.0
1.96
1.85
1.94
2.08
1.97
2.0
g/ml
55050
45600
42150
43500
39150
51600
57600
ng/ml
55.05
45.60
42.15
43.50
39.15
51.60
57.60
distributed in different PCR tubes and then Different DNA samples are
added accordingly in different PCR tubes, all these preparations are
done under laminar air flow chamber to avoid contamination.
Then temperature and all PCR conditions are adjusted in the PCR
machine and the PCR is kept for about 35 cycles. The cycles are done
on an automated cycler, a device which rapidly heats and cools the
test tubes containing the reaction mixture. During this process it
undergoes three major steps, they are- Denaturation (alteration of
structure), annealing (joining), and extension and they takes place at a
different temperature.
Within one cycle, a single segment of double-stranded DNA template is
amplified into two separate pieces of double-stranded DNA. These two
pieces are then available for amplification in the next cycle. As the
cycles are repeated, more and more copies are generated and the
number of copies of the template is increased exponentially.
Figure 18: Catalase Gene Mapping
46
+1Forward
primer
126 bp Fragment of
Catalase gene
Reverse
primer
+12
6
PCR for Catalase specific primers. The obtained product is Catalase gene
which is of 126bp. The expression of DNA in all normal samples indicates the
good quality of DNA. Here we assumed that all the PCR material such as buffer,
dNTPs and Taq polymerase along with 1000bp DNA ladder shown positive results we
have taken C- negative control, L- ladder is about 1000 bp and DDiabetic individual as shown in figure 20(a) & (b).
48
49
5 Conclusion
Diabetes is one of the pathological processes known to be related to an unbalanced
production of ROS, such as H2O2. Therefore, cells must be protected from this oxidative
injury by antioxidant enzymes. In this investigation, Catalase activity was measured in
serum samples of both normal as well as diabetic individuals with different glucose
concentrations ranging from less than 90mg/dl glucose value and more than 130mg/dl
glucose value. We found in our study increasing glucose level shows decrease Catalase
activity as compare to normal individuals.
50
The regulation of Catalase gene is complex and appears to occur through different
pathways. In this study, we have isolated the genomic DNA from normal as well as
Diabetes blood sample. PCR results of catalase gene on 1.5% agarose gel showed band at
126bp. In both samples we successfully amplified the catalase gene.
Therefore, finally we conclude that our finding of this Catalase gene may be used as
Biomarker for Type 2 Diabetes.
6 REFERENCE
51
4 Bratisl Lek Listy, The role of free radicals, oxidative stress and
antioxidant systems in diabetic vascular disease; 101 (10): 541.551,
2000.
5 Durdi Qujeq,Timur Rezvani, Catalase (antioxidant enzyme) activity
in streptozotocin-induced diabetic rats, Department of Biochemistry
and Department of Biophysics, Faculty of Medicine, Babol University
of Medical Sciences, Babol, Iran Accepted on: 28/03/2007.
6 Fatmah A Matough, Siti B Budin, Zariyantey A Hamid,
Nasar
reactive
oxygen species
and
cell cycle
progression
in
antioxidant-related
environmentally
induced
enzymes
oxidative
52
in
protective
stress,
responses
Departamento
to
de
Medicina
Genmica
Toxicologa
Ambiental,
Instituto
de
Singh,
Status
of
Antioxidant
Enzymes
and
Lipid
53
Babasaheb
Ambedkar
Marathwada
University,
Aurangabad,
Rahimi,
Shekoufeh
Nikfar,
Bagher
Larijani,
Mohammad
Research
Center,
Tehran
University
of
Medical
glycated hemoglobin, and insulin and lipid profiles were assessed. CAT
and SOD activities were significantly decreased in T2DM compared
with the control subjects. T allele of CAT and C allele of SOD1 were
significant risk factors for T2DM. No effects of CAT or SOD1 gene
polymorphisms on glycated haemoglobin or on HOMA-IR were found.
With regard to the enzymes activities, only +35 A/C of SOD1 was
55
related to SOD activity. Genetic variants C1167T of CAT gene and +35
A/C of SOD1 gene has no role in insulin resistance in T2DM.
56