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Atomic structure
What is an atom?
An atom is the smallest unit of an element, having the properties of that element.
Are there particles smaller than the atom?
Atoms are not like solid balls (Figure 1) as proposed by Dalton in 1803.
All atoms are built from just three particles protons, neutrons and electrons.
The centre of an atom is called the nucleus and this contains the protons and neutrons.
The nucleus takes up less than 1% of the volume of an atom.
Protons and neutrons have virtually the same mass. The proton and neutron are each
assigned a relative mass of one.
Protons have a positive charge, but neutrons are neutral.
More than 99% of an atom is empty space occupied by moving electrons.
Electrons have a mass about 2 000 times less that of a proton or a neutron.
Electrons have a negative charge. The negative charge on one electron just cancels the
positive charge on one proton.
Electrons move around very rapidly. They tend to occupy layers or shells at different
distances from the nucleus.
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Notes compiled by Lower Sec Science department @HCI
Thinking Time!
Why is the term "relative mass" used in the Table 1 rather than just mass?
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Notes compiled by Lower Sec Science department @HCI
Advanced: For elements after calcium in the 4th period, their third shell can hold up to 18
electrons.
Some interesting facts...
The nucleus takes up less than 1% of the volume of a nucleus.
More than 99% of an atom is empty space occupied by rapid moving electrons.
Protons, neutrons and electrons are the building blocks for all atoms. Hydrogen atoms are the
simplest atoms. Each hydrogen atom has only one proton and one electron. The next
simplest atoms are those of helium with two protons, two electrons and two neutrons. After
helium comes lithium, with three protons, three electrons and four neutrons.
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Notes compiled by Lower Sec Science department @HCI
So, aluminium atoms, with 13 protons and 14 neutrons, have an atomic number of 13 and a mass
number of 27. Sometimes the symbol Z is used for atomic number and the symbol A for mass
number. So, for aluminium, Z = 13 and A = 27.
The figure below shows how the mass number and atomic number are often shown with the symbol
of an element.
The mass number and the atomic number for gold (Au).
How many protons, neutrons and electrons are there in a gold atom?
________________________________________________________
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Notes compiled by Lower Sec Science department @HCI
Thinking Time!
An atom can be described as an electrically neutral entity made up of a positively charged
nucleus at its centre with negatively charged electrons moving around the nucleus.
(a)
(b)
9F
This photo shows evidence for the two isotopes in neon, neon-20 and neon-22. The trace for neon-20
is much thicker than that for neon-22. What does this tell you about the two isotopes? What does
CO represent?
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Notes compiled by Lower Sec Science department @HCI
Each isotope has a relative atomic mass which is a whole number, but the average relative atomic
mass for the mixture of isotopes is not always a whole number.
Chlorine is a good example of an element with isotopes. Naturally occurring chlorine contains two
isotopes 3517 C1 called chlorine-35 and 3717 C1 called chlorine-37. Each of these isotopes has 17 protons
and 17 electrons. Therefore, both isotopes have the same atomic number and the same chemical
properties because these are determined by the number of electrons.
However, one isotope (3517 C1 ) has 18 neutrons and the other (3717 C1) has 20 neutrons. Therefore,
they have different mass numbers, different masses and hence different physical properties because
these depend on the masses of atoms and molecules.
The similarities and differences between isotopes of the same element are summarised in the table
below.
Isotopes can be divided into two types. One type is radioactive; the other is non-radioactive.
Radioactive isotopes give out radiation. This radiation is invisible but it can be detected
with special instruments. Radiation is harmful to life, and in large amounts, can kill people.
It was radioactive isotopes from the Chernobyl nuclear reactor accident that caused the
pollution in 1986. Workers handling radioactive isotopes must take precautions to shield
themselves from radiation.
Most isotopes in the air and the ground are non-radioactive and they do not produce
radiation. Most radioactive isotopes are made artificially.
Radioactive isotopes have important uses.
The cobalt isotope, 60Co, is used in
hospitals to treat cancer patients. The
intense radiation from this isotope destroys
the cancer cells. Cobalt-60 is also used to
sterilise surgical instruments used in
hospital operations. The powerful radiation
kills germs.
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Notes compiled by Lower Sec Science department @HCI
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Notes compiled by Lower Sec Science department @HCI
37
17 C1?
Now, the previous graphical figure shows that chlorine contains three times as much 35 17 C1 as
37
17 C1 i.e. the percentages of the two isotopes are 75% to 25%. Therefore the atomic mass of
chlorine
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Notes compiled by Lower Sec Science department @HCI
The shell which is farthest from the nucleus and occupied by electrons is called the valence
shell (outer shell). The electrons in the valence shell are known as valence electrons (outer
electrons). In a chemical reaction, only these valence electrons are involved in chemical
bonding between atoms.
Figure 4
Formation of Ions
During chemical reactions, some atoms might lose/gain electron(s). Atom becomes an ion
(charged particle) when it gains or loses electron(s).
Question: Why does an atom become a charged particle when it gains or loses electron(s)?
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Notes compiled by Lower Sec Science department @HCI
(a)
Formation of cations
When an atom loses one or more electrons, it becomes a positively charged particle called
cation.
In a lithium atom, there are 3 protons and 3 electrons. In a lithium ion, there are 3 protons
and 2 electrons. Therefore, the lithium ion carries an overall positive charge of 1+ and is
written as Li+.
(b)
Formation of anions
When an atom gains one or more electrons, it becomes a negatively charged particle called
anion.
In a fluorine atom, there are 9 protons and 9 electrons. In a fluoride ion, there are 9 protons
and 10 electrons. Therefore, the fluoride ion carries an overall positive charge of 1- and is
written as F-.
Thinking Time!
Why do atoms become ions? (Note: this will be covered under chemical bonding)
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Notes compiled by Lower Sec Science department @HCI
Mendeleev arranged all the known elements in order of their relative atomic masses.
He also arranged the elements in horizontal rows so that elements with similar properties
were in the same vertical column.
Because of the periodic repetition of elements with similar properties, Mendeleev called his
arrangement a periodic table.
The figure below shows part of Mendeleev's periodic table. Notice that elements with similar
properties, such as sodium and potassium, fall in the same vertical column. Which other pairs or
trios of similar elements appear in the same vertical column of Mendeleevs table?
Mendeleev had some brilliant and successful ideas in connection with his periodic table.
He left gaps in his table so that similar elements were in the same vertical group. Three of these
gaps are shown as asterisks in the figure above.
He predicted the properties of the missing elements from the properties of elements above and
below them in his table. Within 15 years of his predictions, the missing elements had been
discovered. They were called scandium, gallium and germanium. Their properties were very
similar to Mendeleev's predictions.
The success of Mendeleev's predictions showed that his ideas were probably correct. His periodic
table was quickly accepted as an important summary of the properties of elements.
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Notes compiled by Lower Sec Science department @HCI
In the periodic table, the elements are arranged in order of increasing proton (atomic)
number, and are classified according to Groups and Periods.
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Notes compiled by Lower Sec Science department @HCI
(a)
Group
The groups in the Periodic Table are numbered from I to VII and then Group 0. Some of
these groups have names:
Group number
Group
I
Alkali metals
II
Alkaline earth metals
VII
Halogens
0
Noble gases
Elements between Group II and III are known as transition metals or transition elements.
Elements in the same group have similar chemical properties and will undergo the same
type of chemical reactions.
(b)
Period
Element
Proton
number
H
He
Li
Be
B
C
N
O
F
Ne
Na
Mg
Al
Si
P
S
Cl
Ar
K
Ca
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
(c)
Number of electrons in
1st
2nd
3rd
4th
shell
shell
shell shell
1
2
2
1
2
2
2
3
2
4
2
5
2
6
2
7
2
8
2
8
1
2
8
2
2
8
3
2
8
4
2
8
5
2
8
6
2
8
7
2
8
8
2
8
8
1
2
8
8
2
Electronic
Period Group
configuration
1
2
2.1
2.2
2.3
2.4
2.5
2.6
2.7
2.8
2.8.1
2.8.2
2.8.3
2.8.4
2.8.5
2.8.6
2.8.7
2.8.8
2.8.8.1
2.8.8.2
1
1
2
2
2
2
2
2
2
2
3
3
3
3
3
3
3
3
4
4
0
I
II
III
IV
V
VI
VII
0
I
II
III
IV
V
VI
VII
0
I
II
One useful way of classifying elements is as metals and non-metals. Unfortunately, it is not easy
to classify some elements in this way. Take, for example, graphite and silicon. These two elements
have high melting points and high boiling points (like metals) but they have low densities (like
non-metals).
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Notes compiled by Lower Sec Science department @HCI
They conduct electricity better than non-metals but not as well as metals. Elements with some
properties like metals and other properties like non-metals are called metalloids. Because of this
difficulty in classifying elements neatly as metals and non-metals, chemists looked for patterns
in the properties and reactions of smaller groups of elements.
Electronic Structure
Down each group, the number of valence electrons is the same for each element and is equal
to the group number.
Example: Group I Elements
Element
Li
Na
K
Electronic configuration
2.1
2.8.1
2.8.8.1
Group I elements are very reactive. Since elements with similar electronic configurations
have similar chemical properties, elements in the same group have similar chemical
properties.
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Notes compiled by Lower Sec Science department @HCI
(ii)
Across the period, the properties of elements change from metallic to nonmetallic.
Generally, elements with small number of electrons in the valence shell (e.g. Group I and II)
are metals. Elements with large number of electrons in the valence shell (e.g. Group VII and
0) are non-metals.
The line that divides metals from non-metals runs run diagonally through the Periodic Table.
Elements found beside this dividing line (zigzag line) are known as metalloids. Metalloids
have some properties of non-metals and metals.
Apart from noble gases, the most reactive elements are near the left and right-hand sides of the periodic
table. The least reactive elements are in the centre. Sodium and potassium, two very reactive metals,
are at the left-hand side. The next most reactive metals, like calcium and magnesium, are in group II,
whereas less reactive metals (like iron and copper) are in the centre of the table. Carbon and silicon,
unreactive non-metals, are in the centre of the periodic table. Sulfur and oxygen, which are nearer
the right-hand edge, are more reactive. Fluorine and chlorine, the most reactive non-metals, are very
close to the right-hand edge.
(d)
Charges on ions
Charges on the ions formed are related to the group number and number of valence
electrons.
Elements on the left side of the Periodic Table lose their valence electrons to form cations
with charges corresponding to their group number. Elements on the right side of the
Periodic Table gain electrons to form anions. The charges on the anions corresponding to
the number of electrons gained to fill their valence shells with eight electrons.
Element
Group number
Formula of ion
Na
I
Na+
Mg
II
Mg2+
Al
III
Al3+
Si
IV
-
P
V
P3-
S
VI
S2-
Cl
VII
Cl-
Ar
0
-
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Notes compiled by Lower Sec Science department @HCI
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Notes compiled by Lower Sec Science department @HCI
Chemical bonds
There are three ways of forming chemical bonds between atoms:
(i)
Ionic bonding
(ii)
Covalent bonding
(iii) Metallic bonding (to be covered in Sec. 3)
i.
Ionic bonding
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Notes compiled by Lower Sec Science department @HCI
In a chlorine atom, there are 17 protons and 17 electrons. In a chloride ion, there are 17
protons and 18 electrons. Therefore, the chloride ion carries an overall positive charge of 1and is written as Cl-.
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Notes compiled by Lower Sec Science department @HCI
(b)
Steps:
1.
Draw the valence electrons of the elements using Dot and Cross only.
2.
Electron(s) is/are transferred from the valence shell of the metal to the valence shell of
the non-metal.
3.
The anion that has gained electron(s) from the cation will now have two type of
electrons one originally from its valence shell, another one from the cation
differentiated by dots and crosses.
4.
Remember to indicate the charges of the ions.
Examples of Dot-and-cross diagram can be found in figure 7 and 8.
Covalent bonding
Some atoms form bonds by sharing electrons to gain electronic configuration of a noble gas.
The bonds formed are known as covalent bonds.
A covalent bond is formed by the sharing of a pair of electrons between two atoms.
Each atom contributes one electron to the bond.
Generally, covalent bonds are formed between atoms of non-metal. Covalent bonds can be
formed between atoms of same elements or between atoms of different elements.
Compounds which contain covalent bonds are known as covalent compounds.
Single covalent bond - One pair of shared electrons between two atoms
Double covalent bond - Two pair of shared electrons between two atoms
Triple covalent bond - Three pair of shared electrons between two atoms
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Notes compiled by Lower Sec Science department @HCI
(a)
Hydrogen molecules, H2
A hydrogen atom has 1 valence electron.
electronic configuration of a noble gas.
In order to obtain the electronic configuration of helium, two hydrogen atoms can share a pair
of electrons between themselves to form hydrogen molecules, H2 (figure 5). In order to
differentiate the two electrons, the electron of one atom is represented by a cross while the
other electron of another atom is represented by a dot.
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Notes compiled by Lower Sec Science department @HCI
(b)
Valency
1
2
3
4
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Notes compiled by Lower Sec Science department @HCI
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Notes compiled by Lower Sec Science department @HCI
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Notes compiled by Lower Sec Science department @HCI
Notice that the structure and bonding of a substance determine its properties and, in
turn, the properties determine its uses.
So the links from structure and bonding to properties help us to explain the uses of materials why metals are used as conductors, why graphite is used in pencils and why clay is used to
make bricks.
Earlier, you have learnt that all substances are made up from only three different types of
particle - atoms, ions, and molecules.
These three particles give rise to four different solid structures.
giant metallic structures,
giant covalent structures,
giant ionic structures, and
simple molecular structures.
The table below shows the particles in these four structures, the types of substances formed
and examples of these substances.
The four types of solid structure and the particles they contain
Types of
structure
Giant
metallic
Giant
covalent
Giant ionic
Simple
molecular
Particles in the
structure
atoms
Very large molecule
containing thousands
of atoms
Ions
Small molecules
containing a few
atoms
Types of substance
Examples
Compounds of metals
with non-metals
Non-metals of nonmetal compounds
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Notes compiled by Lower Sec Science department @HCI
X-ray analysis shows that the atoms in metal grains - packed in a regular fashion, but the
grains themselves are irregular-shaped crystals pushed tightly together.
Metals usually have a high density. This suggests that the atoms are packed close together. In
fact, X-ray studies show that the atoms of most metals are packed as close together as
possible. This arrangement is close packing. The figure above shows a few atoms in layer of
a metal crystal.
Notice that each atom in the middle of the
crystal touches six other atoms in the same
layer. When a second layer is placed on top of
the first layer, atoms in the second layer sink
into the dips between atoms in the first layer.
This means that any one atom in the first layer
can touch six atoms in its own layer, three
atoms in the layer above it and three atoms in
the layer below, i.e. a total of twelve atoms in
all.
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Notes compiled by Lower Sec Science department @HCI
diamond is a single giant molecule or a macromolecule. Only a small number of atoms are
shown in the model. In a real diamond, there are billions of atoms.
The properties of diamond
Diamond is very hard because its carbon atoms are linked by very strong covalent
bonds. Another reason for its hardness is that the atoms are not arranged in layers so they
cannot slide over one another like the atoms in metals. In fact, diamond is the hardest
known natural substance. Most of its industrial uses depend on this hardness.
Diamond has a very high melting point because of the strong covalent bonds linking
carbon atoms in a giant structure. This means that the atoms cannot vibrate fast enough to
break away from their neighbours until very high temperatures are reached.
Diamond does not conduct electricity. Unlike metals, diamond has no free electrons
because all four electrons in the outer shell of each carbon atom are held firmly in
covalent bonds. So in diamond there are no free electrons to form an electric current.
Ionic compounds form when metals react with non-metals. For example, when sodium burns
in chlorine, sodium chloride is formed.
2Na
two sodium
atoms
+
C12
+ one chlorine
molecule
In solid ionic compounds, the ions are held together by the attraction between positive ions
and negative ions. The figures below show how the ions are arranged in one layer of sodium
chloride and a three-dimensional model of the structure of sodium chloride. Notice that Na+
ions are surrounded by Cl- ions and vice versa.
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Notes compiled by Lower Sec Science department @HCI
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Notes compiled by Lower Sec Science department @HCI
For example, hydrogen is H2, chlorine is Cl2, iodine is I2, carbon dioxide is CO2 and
tetrachloromethane is CCl4 . Sugar (C12H22O11) has much larger molecules than these
substances, but it still counts as a simple molecule.
In these simple molecular substances, the atoms are held together in each molecule by strong
covalent bonds. But there are only weak forces between the separate molecules. These weak
forces between the separate molecules are called intermolecular bonds or Van der Waals
forces.
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Notes compiled by Lower Sec Science department @HCI
Notice the following key points from the last four ions.
Substances with giant structures are often hard with high melting points and boiling
points.
Substances with simple molecular structures are usually soft with low melting points
and boiling points.
There are three types of strong force between particles in giant structures; metallic
bonds between metal atoms, covalent bonds between non-metal atoms, ionic bonds
between positive metal ions and negative non-metal ions.
In simple molecular substances there are relatively weak forces between the separate
molecules.
Ambook Resources
For more fun and interactivity of this topic, do refer to your amBook under the
unit: Interactions Atoms and Molecules.
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Notes compiled by Lower Sec Science department @HCI
Listed below are the atomic numbers, names, and symbols of the most common elements. The
atomic number is used to determine the place of the element in the periodic table; it also has
other meaning as you will find out later in the course.
Become familiar with the names and symbols of these elements.
Atomic
Number
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
Name
hydrogen
helium
lithium
beryllium
boron
carbon
nitrogen
oxygen
fluorine
neon
sodium
magnesium
aluminum
silicon
phosphorus
sulfur
chlorine
argon
potassium
calcium
scandium
titanium
vanadium
chromium
manganese
iron
cobalt
Symbol
H
He
Li
Be
B
C
N
O
F
Ne
Na
Mg
Al
Si
P
S
Cl
Ar
K
Ca
Sc
Ti
V
Cr
Mn
Fe
Co
Number
28
29
30
33
35
36
37
38
47
48
50
51
53
54
55
56
74
78
79
80
82
83
86
87
88
92
Atomic
Name
nickel
copper
zinc
arsenic
bromine
krypton
rubidium
strontium
silver
cadmium
tin
antimony
iodine
xenon
cesium
barium
tungsten
platinum
gold
mercury
lead
bismuth
radon
francium
radium
uranium
Symbol
Ni
Cu
Zn
As
Br
Kr
Rb
Sr
Ag
Cd
Sn
Sb
1
Xe
Cs
Ba
w
Pt
Au
Hg
Pb
Bi
Rn
Fr
Ra
U
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Notes compiled by Lower Sec Science department @HCI
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Notes compiled by Lower Sec Science department @HCI
Watch out for compound ions, e.g. ammonium, hydrogencarbonate, hydroxide, nitrate,
sulfate and carbonate. If you need more than one of them to balance the charges, put brackets
around their symbol at step (a) or (c). For example, sodium hydroxide is NaOH, but
magnesium hydroxide is Mg(OH)2; copper (II) sulfate is CuSO4, but ammonium sulfate is
(NH4)2SO4.
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Notes compiled by Lower Sec Science department @HCI
Group
I
II
III
IV
VI
VII
He
Hydrogen
Helium
1
7
11
12
14
16
19
20
Ne
Li
Be
Lithium
Beryllium
Boron
Carbon
Nitrogen
Oxygen
Fluorine
23
24
27
28
31
32
Neon
10
35.5
40
Na
Mg
Al
Si
Cl
Ar
Sodium
Magnesium
Aluminium
Silicon
Phosphorus
Sulphur
Chlorine
Argon
12
11
39
13
40
45
48
Ca
Sc
Potassium
Calcium
Scandium
19
20
Ti
Titanium
21
51
52
55
56
59
59
64
65
15
14
70
73
16
75
17
79
18
80
84
Cr
Mn
Fe
Co
Ni
Cu
Zn
Ga
Ge
As
Se
Br
Kr
Vanadium
Chromium
Manganese
Iron
Cobalt
Nickel
Copper
Zinc
Gallium
Germanium
Arsenic
Selenium
Bromine
Krypton
23
24
25
26
27
28
29
30
32
31
33
34
35
36
22
85
88
89
91
93
96
Rb
Sr
Zr
Nb
Mo
Rubidium
37
Strontium
38
133
Yttrium
Zirconium
39
137
40
139
Niobium
178
Molybdenum
42
41
181
Tc
Technetium
43
184
101
103
106
108
112
115
119
122
128
127
131
Ru
Rh
Pd
Ag
Cd
In
Sn
Sb
Te
Xe
Ruthenium
44
186
Rhodium
45
190
Palladium
46
192
Silver
47
Cadmium
48
195
197
Indium
49
201
Tin
50
Antimony
51
204
207
Tellurium
52
Iodine
53
Xenon
54
209
Cs
Ba
La
Hf
Ta
Re
Os
Ir
Pt
Au
Hg
Tl
Pb
Bi
Po
At
Rn
Caesium
Barium
Lanthanium
Hafnium
Tantalum
Tungsten
Rhenium
Osmium
Iridium
Platinum
Gold
Mercury
Thallium
Lead
Bismuth
Polonium
Astatine
Radon
55
57
56
226
72
Fr
Ra
Ac
Francium
Radium
Actinium
87
88
73
74
89
140
141
144
Ce
Pr
Nd
Cerium
Praseodymium
59
58
Key
76
77
78
79
80
81
82
83
84
85
86
a
X
75
227
Neodymium
60
Pm
Promethium
61
150
152
157
159
162
165
167
169
173
175
Sm
Eu
Gd
Tb
Dy
Ho
Er
Tm
Yb
Lu
Samarium
62
Europium
63
Gadolinium
64
Terbium
65
Dysprosium
66
Holmium
67
Erbium
68
Thulium
69
Ytterbium
70
Lutetium
71
232
X = atomic symbol
b = proton (atomic) number
Th
Pa
Np
Pu
Am
Cm
Bk
Cf
Es
Fm
Md
No
Lr
Thorium
Protactinium
Uranium
Neptunium
Plutonium
Americium
Curium
Berkelium
Californium
Einsteinium
Fermium
Mendelevium
Nobelium
Lawrencium
90
238
91
92
93
94
95
96
97
98
99
100
101
102
103
The volume of one mole of any gas is 24 dm3 at room temperature and pressure (r.t.p.)
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Notes compiled by Lower Sec Science department @HCI