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Analytical Biochemistry
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a r t i c l e i n f o a b s t r a c t
Article history: Respiratory complex II (succinate:ubiquinone oxidoreductase) connects the tricarboxylic acid cycle to the
Received 4 June 2013 electron transport chain in mitochondria and many prokaryotes. Complex II mutations have been linked
Received in revised form 9 July 2013 to neurodegenerative diseases and metabolic defects in cancer. However, there is no convenient stoichi-
Accepted 12 July 2013
ometric assay for the catalytic activity of complex II. Here, we present a simple, quantitative, real-time
Available online 22 July 2013
method to detect the production of fumarate from succinate by complex II that is easy to implement
and applicable to the isolated enzyme, membrane preparations, and tissue homogenates. Our assay uses
Keywords:
fumarate hydratase to convert fumarate to malate and uses oxaloacetate decarboxylating malic dehydro-
Coupled assay
Fumarate hydratase
genase to convert malate to pyruvate and to convert NADP+ to NADPH; the NADPH is detected spectro-
Oxaloacetate decarboxylating malic enzyme metrically. Simple protocols for the high-yield production of the two enzymes required are described;
Succinate:ubiquinone oxidoreductase oxaloacetate decarboxylating malic dehydrogenase is also suitable for accurate determination of the
activity of fumarate hydratase. Unlike existing spectrometric assay methods for complex II that rely on
articial electron acceptors (e.g., 2,6-dichlorophenolindophenol), our coupled assay is specic and stoi-
chiometric (1:1 for succinate oxidation to NADPH formation), so it is suitable for comprehensive analyses
of the catalysis and inhibition of succinate dehydrogenase activities in samples with both simple and
complex compositions.
2013 The Authors. Published by Elsevier Inc. Open access under CC BY license.
In mammalian mitochondria, succinate:ubiquinone oxidore- of fumarate to succinate [4]. Some parasites, such as Ascaris
ductase (succinate dehydrogenase, complex II, EC 1.3.5.1) catalyzes suum, switch between succinate oxidation and fumarate reduc-
the oxidation of succinate to fumarate in the matrix and the reduc- tion during different life stages, and a similar switch has been
tion of ubiquinone-10 in the inner membrane [1,2]. Thus, it links proposed to occur in mammalian cells during hypoxia [5].
the tricarboxylic acid cycle to the respiratory electron transport Mutations in complex II have been identied as a cause of
chain. Complex II comprises four subunits [13]. In the hydrophilic Leigh syndrome, a neurodegenerative disease [6], and complex
domain, the largest subunit houses a covalently bound FAD (avin II was recently identied as a signicant source of mitochon-
adenine dinucleotide) cofactor and the succinate-binding site, and drial reactive oxygen species production [7]. Complex II muta-
a smaller subunit contains three ironsulfur clusters that transfer tions have also been linked to hereditary paragangliomas,
electrons from the avin to ubiquinone. The binding site for the tumors in the head and neck [8], and there is currently signif-
ubiquinone substrate is located close to a heme cofactor in the icant interest in how mitochondrial succinate and fumarate
membrane-associated domain that is composed of two hydropho- levels are linked to the stabilization of HIF-1a and, thus, to cell
bic subunits. proliferation [9].
Homologues of mammalian complex II are widely conserved Due to its central role in metabolism and medicine, measure-
in aerobic organisms, in both eukaryotes and prokaryotes. ments of complex II activity have long been used to assess the activ-
Some prokaryotes use fumarate as a terminal electron acceptor ity of both the enzyme itself and the mitochondrial electron
in anaerobic respiration by using enzymes that are closely re- transport chain as a whole. However, there is no convenient and
lated to complex II to catalyze the reverse reaction, reduction reliable method for testing complex II activity. Clark oxygen elec-
trodes are often used [10] (see, e.g., Refs. [7,11]), but they are expen-
sive in their sample requirements, and because they measure
succinate:O2 oxidoreduction they can assess only the combined
activity of respiratory complexes II, III, and IV. Alternative real-time
assays of complex II rely on articial electron acceptors that change
Corresponding author. color on reduction and, therefore, can be monitored spectrophoto-
E-mail address: jh@mrc-mbu.cam.ac.uk (J. Hirst).
0003-2697 2013 The Authors. Published by Elsevier Inc. Open access under CC BY license.
http://dx.doi.org/10.1016/j.ab.2013.07.018
20 Coupled enzyme assay for succinate dehydrogenase / A.J.Y. Jones, J. Hirst / Anal. Biochem. 442 (2013) 1923
1
Kinetic characterization of FumC and MaeB
Abbreviations used: DCPIP, 2,6-dichlorophenolindophenol; INT, 2-(4-iodo-phe-
nyl)-3-(4-nitrophenyl)-5-phenyl tetrazolium chloride; PMS, phenazine methosulfate;
FumC, fumarate hydratase; MaeB, oxaloacetate decarboxylating malic dehydroge- Fig. 1 shows how the rates of catalysis by the FumC and MaeB
nase; EDTA, ethylenediaminetetraacetic acid; SMP, submitochondrial particle. enzymes used here depend on the concentrations of fumarate
Coupled enzyme assay for succinate dehydrogenase / A.J.Y. Jones, J. Hirst / Anal. Biochem. 442 (2013) 1923 21
0
A
0 5 10 15 20 Measurement of rate of succinate oxidation by submitochondrial
[Fumarate] (mM) particles
4 4
the assay; it begins slowly and then speeds up to reach a constant
2 2 value after approximately 100 s. During the assay lag phase, the
0
B 0
C intermediate fumarate and malate concentrations accumulate to
0 10 20 30 40 50 60 0 1 2 3 4 their steady-state values. Thus, the lag phase can be eliminated
[Malate] (mM) [NADP+] (mM) by increasing the concentrations of FumC and MaeB. However,
Fig.1. Kinetic characterization of the FumC and MaeB enzymes. (A) Rate of
the nal rate measurement is unchanged, and because of the in-
conversion of fumarate to malate by FumC, detected by the production of NADPH creased enzyme requirements we consider this to be unnecessary.
that is driven by the conversion of malate to pyruvate by MaeB. The concentrations To conrm the specicity of the coupled assay for the conver-
were 1.7 lg ml1 FumC, 300 lg ml1 MaeB, and 2 mM NADP+. (B,C) Rates of sion of succinate to fumarate, rates of NADPH formation were mea-
conversion of malate to pyruvate by MaeB, detected by the production of NADPH.
sured in the absence of various assay components. In the absence
The concentrations were 44.2 lg ml1 MaeB and 4 mM NADP+ (B) and 40 mM
malate (C). In all cases, assays were carried out in triplicate with standard error bars of SMPs, succinate, MaeB, or NADP+ the observed rates were negli-
reported, at 32 C, in buffers containing 10 mM TrisSO4 (pH 7.4), 250 mM sucrose, gible, but in the absence of FumC a signicant rate, approximately
2 mM MgSO4, and 1 mM K2SO4. 10% of the control, was observed. Based on the other control exper-
iments, we conclude that this results from a low level of endoge-
and of malate and NADP+, respectively. First, the assay buffer used nous fumarate hydratase in the SMP preparationwhich does not
for all experiments contained 2 mM Mg2+ because MaeB requires affect the assay results because it merely reduces the load on the
Mg2+ for catalysis [18]; as expected, no catalysis was observed in exogenous FumC.
the absence of Mg2+, and concentrations above 4 mM have been Fig. 2B shows that our standard working concentrations of
shown previously to inhibit [18]. K+ (2 mM) was also included in MaeB (300 lg ml1) and FumC (60 lg ml1) are adequate for the
the assay buffer because it was shown previously to activate MaeB quantitative detection of succinate oxidation by SMPs (provided
by approximately 30% [18]. The rate of MaeB catalysis is easily that the lag phases are discarded), and Fig. 2C shows that the rate
measured by the accumulation of NADPH at 340 to 380 nm;
Fig. 1B shows that the apparent KM for malate is relatively high
0.5
Abs. 340-380 nm
(7.3 0.9 mM) and the Vmax is poor (8.37 0.08 lmol min1 mg1
or 92 0.93 s1), and Fig. 1C shows that for NADP+ the KM is lower 0.4
(52 2.6 lM). Both KM values were measured with the second sub- 0.3
strate at a high enough concentration for Vmax. Our values are 0.2
comparable to those reported previously (KM(malate) = 3.4 mM, 0.1
KM(NADP+) = 41.5 lM, Vmax = 67 s1) [18]. Fig. 1A shows how the rate 0
A
of conversion of fumarate to pyruvate, in the presence of FumC and 0 100 200 300
MaeB, depends on the concentration of fumarate present; the KM Time (s)
for fumarate is 64 7.8 lM and Vmax is 293 7 lmol min1 mg1
or 975 21.7 s1. The values are similar to those reported previ- mol min-1 mg-1 Abs min-1
ously (207 lM and 1149 s1) [21]. For these measurements, the 0.8 0.3
concentration of MaeB was set to 300 to 600 lg ml1 (0.45 0.6
Rate
0.90 lM) to overcome its poor Vmax value; increasing the MaeB 0.2
0.4 MaeB = 300 g ml -1
concentration further did not increase the observed rate of cataly- FumC = 60 g ml -1
0.1
sis (see below also). The concentration of NADP+ was set to 2 mM, 0.2
approximately 20 times higher than KM. Along with the release of B C
0 0
CO2, the high NADP+/NADPH ratio precludes the reverse reaction, 0 1 2 3 4 0 100 200
conversion of pyruvate to malate, which has been demonstrated Relative enzyme [SMP] (g ml -1)
to occur slowly under some conditions [18]. The lower KM and
concentration
higher Vmax values observed for FumC allowed it to be used at Fig.2. Quantifying the rate of succinate oxidation by the respiratory chain in
lower concentrations, 60 to 120 lg ml1 (0.30.6 lM), than MaeB submitochondrial particles. (A) Assay trace measuring succinate oxidation by SMPs
in subsequent experiments (see below also). (40 lg ml1), detected by the coupled FumCMaeB assay system as the formation of
NADPH (300 lg ml1 MaeB and 60 lg ml1 FumC). The trace becomes linear after
Previously, the decarboxylating malic enzyme from pigeon liver
approximately 100 s. (B) Observed rates of succinate oxidation by SMPs
(equivalent to MaeB) was used in an assay for fumarate hydratase (40 lg ml1), detected by the coupled FumCMaeB assay system as the formation
activity [22]. Similar assays have been used recently in studies of of NADPH, over a range of FumC and MaeB concentrations. (C) Rates of succinate
fumarate hydratase deciencies (see, e.g., Ref. [23]). However, oxidation by SMPs, detected by the coupled FumCMaeB assay system as the
commercially available decarboxylating malic enzymes (EC formation of NADPH, over a range of SMP concentrations (300 lg ml1 MaeB and
60 lg ml1 FumC). In panels B and C, assays were carried out in triplicate with
1.1.1.38, -.39, or -.40) are prohibitively expensive, precluding them
standard error bars reported. In all cases, assays were at 32 C in buffers containing
from being applied extensively in kinetic studies. Alternatively, 10 mM TrisSO4 (pH 7.4), 250 mM sucrose, 5 mM succinate, 2 mM NADP+, 2 mM
malate dehydrogenases (EC 1.1.1.37 or -.82) are much cheaper, MgSO4, and 1 mM K2SO4.
22 Coupled enzyme assay for succinate dehydrogenase / A.J.Y. Jones, J. Hirst / Anal. Biochem. 442 (2013) 1923
of NADPH reduction by the detection system depends directly on NADH was added instead of succinate. Therefore, DCPIP is reduced
the SMP concentration over the whole range tested. Therefore, directly by the respiratory chain enzymes without the participation
the detection system is not rate limiting in any of these experi- of ubiquinone, so the assay does not address the complete complex
ments, and the observed rates accurately dene the rates of succi- II turnover cycle. When 100 lM decylubiquinone and 100 lM
nate oxidation. DCPIP were present (the DCPIP should be reduced by the decyl-
ubiquinol product), the rate of DCPIP reduction increased to
Comparison of coupled assay system with alternative methods 0.20 0.007 lmol min1 mg1. This value is signicantly less than
the value from our coupled assay even if the ubiquinone-indepen-
Succinate oxidation by complex II in SMPs is coupled to the dent rate is not subtracted. Furthermore, when the full respiratory
reduction of O2 by complex IV, via the electron transport chain, chain is present, DCPIP is unable to compete with complex III for
in a 2:1 succinate:O2 stoichiometry. Therefore, measurements of ubiquinol, so complex IV must be inhibited to allow ubiquinone
O2 consumption, using a Clark electrode, are the gold standard reduction to be measured. For example, when complex I NADH:ubi-
for conrming the accuracy of any new assay. Fig. 3A shows that quinone oxidoreduction was measured with 30 lg ml1 SMPs and
measurements of the rate of succinate oxidation by SMPs using 100 lM NADH, in the absence of a complex IV inhibitor, the rate
our coupled assay system agree very well with Clark electrode of NADH oxidation measured directly was 0.38 0.005 lmol
measurements. Note that our assay system can be applied to mea- min1 mg1, but the rate of DCPIP reduction was much lower,
surements on isolated complex II, whereas the Clark electrode can 0.18 0.009 lmol min1 mg1. Rates of succinate oxidation by
be used only when complex II catalysis is linked to O2 reduction by solubilized complex II determined using 100 lM INT [13] instead
the respiratory chain. Our assay has the additional advantages of of DCPIP were similarly lower than the control value (see Table 1).
being a spectrophotometric method, with signicantly lower sam-
ple requirements, improved convenience, and quicker and easier Measurement of complex II activity in tissue samples
data accumulation.
To investigate alternative methods that are applicable to iso- To detect biochemical defects in complex II in patients with
lated complex II as well as to membrane and tissue preparations, mitochondrial diseases, rates of complex II catalysis are typically
we compared our coupled assay for succinate oxidation with an as- measured in tissue homogenates from biopsy samples. Specically,
say using DCPIP [12,14] (see Table 1). The rate of succinate oxidation the rate of DCPIP reduction is monitored in the presence of succi-
by detergent-solubilized bovine heart mitochondrial membranes nate and in the presence and absence of ubiquinone-1 [24]. There-
was measured in the presence of a short-chain ubiquinone, decyl- fore, measurements from our coupled assay were compared with
ubiquinone (the solubilization isolates complex II from the other DCPIP measurements on rat skeletal muscle homogenates (see Ta-
enzymes and precludes signicant turnover from endogenous ubi- ble 1). Our coupled assay, with 5 mM succinate, 50 lM
quinone-10). Using 30 lg ml1 solubilized membranes, 5 mM suc- ubiquinone-1, and 1.5 mM NaCN, gave a rate of 0.12 0.006
cinate, and 100 lM decylubiquinone, the observed coupled assay lmol min1 mg1 that was fully sensitive to 2 lM atpenin A5, a
rate was 0.41 0.023 lmol min1 mg1 (the rate was negligible in complex II inhibitor [14]. Using the same substrate concentrations,
the absence of any of the components). With 100 lM DCPIP, a sub- the rate measured using 100 lM DCPIP was only 0.06 0.001
stantial rate of DCPIP reduction (0.062 0.003 lmol min1 mg1) lmol min1 mg1. In the absence of both ubiquinone-1 and NaCN,
was observed even in the absence of decylubiquinone. A similar re- the rates were 0.054 0.002 lmol min1 mg1 (coupled assay)
sult (0.088 0.005 lmol min1 mg1) was obtained when 100 lM and 0.019 0.001 lmol min1 mg1 (DCPIP). As expected, in the
absence of ubiquinone-1, NaCN inhibited succinate oxidation in
the coupled assay fully, but the DCPIP assay gave a rate of
0.018 0.001 lmol min1 mg1. Typical rates reported using succi-
1.2 nate, ubiquinone-1, NaCN, and DCPIP in human tissue samples are
(mol min-1 mg-1)
0.061 to 0.079 lmol min1 mg1 [24], comparable to the rate de-
0.8 tected here in rat tissue by the same method. Thus, the same picture
Rate
Table 1
Comparison of values measured using the different assay methods.
Note. All values are reported in lmol min1 mg1 and measured with 5 mM succinate and 100 lM decylubiquinone (DQ) or 50 lM ubiquinone-1 (Q1) as stated.
a
Detergent-solubilized bovine heart mitochondrial membranes in which complex II is functionally isolated.
b
Rat skeletal muscle homogenate.
c
NaCN inhibits cytochrome c oxidase; it prevents reoxidation of endogenous ubiquinol-10 so that no ubiquinone-10 is present.
ratory (0.264 lmol min1 mg1 [11]) due to improvements in mito- mitochondrial complex II (succinateubiquinone oxidoreductase), Proc. Natl.
Acad. Sci. USA 100 (2003) 473477.
chondria preparation. Fig. 3B shows that atpenin A5, an inhibitor
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