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Abstract
Background: The gene zinc finger homeobox 3 (ZFHX3) encodes a transcription factor with cardiac expression and its
genetic variants are associated with atrial fibrillation (AF). We aimed to explore the associations between single nucleotide
polymorphisms (SNPs) of ZFHX3 and the risk of AF in a Chinese Han population.
Methods: We genotyped eight SNPs, including seven potentially functional SNPs and one previously reported SNP by using
the middle-throughput iPLEX Sequenom MassARRAY platform. Odds ratios (ORs) and 95% confidence intervals (CIs) were
calculated in logistic regression models.
Results: We enrolled a total of 1,593 Chinese Han origin individuals in the study, including 597 AF patients and 996 non-AF
controls. Logistic regression analyses revealed that potentially functional SNPs rs6499600 and rs16971436 were associated
with a decreased risk of AF (adjusted OR = 0.73, 95% CI: 0.630.86, P = 1.0761024; adjusted OR = 0.74, 95% CI: 0.560.98,
P = 0.039, respectively). In addition, rs2106261 showed a robust association with an increased risk of AF (adjusted OR = 1.71,
95% CI: 1.462.00, P = 1.85610211). After multiple comparisons, rs16971436 conferred a borderline significant association
with the risk of AF. Stratification analysis indicated that the risks of AF were statistically different among subgroups of age
for rs2106261, and the effect for rs16971436 was more evident in subgroups of patients with coronary artery disease.
Conclusion: In summary, our study investigated the role of genetic variants of ZFHX3 in AF and two SNPs (rs2106261,
rs6499600) showed significant associations while rs16971436 conferred a borderline significant association with AF risk in
Chinese Han populations. However, further large and functional studies are warranted to confirm our findings.
Citation: Liu Y, Ni B, Lin Y, Chen X-g, Fang Z, et al. (2014) Genetic Polymorphisms in ZFHX3 Are Associated with Atrial Fibrillation in a Chinese Han
Population. PLoS ONE 9(7): e101318. doi:10.1371/journal.pone.0101318
Editor: Xun Ai, Loyola University Chicago, United States of America
Received February 23, 2014; Accepted June 4, 2014; Published July 1, 2014
Copyright: 2014 Liu et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted
use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was supported by grants from the National Natural Science Foundation of China (Grant 81170160), the Program for Development of
Innovative Research Team in the First Affiliated Hospital of Nanjing Medical University (No. IRT-004), and the Six Peak Talents Foundation of Jiangsu Province
(No. 2011-WS-071). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing Interests: The authors have declared that no competing interests exist.
* Email: zhibin_hu@njmu.edu.cn (ZH); njzfx6@163.com (FZ)
. These authors contributed equally to this work.
association of rs2106261 in ZFHX3 with AF risk in Chinese Han stream region of the gene), with MAF$0.05 in Chinese Han
populations. population (CHB). Then, a web-based analysis tool was used to
predict the function of these SNPs (http://snpinfo.niehs.nih.gov/
Materials and Methods snpinfo/snpfunc.htm). After function prediction analysis, a total of
9 potentially functional SNPs were selected. Using the Haploview
Study population 4.2 software, linkage disequilibrium (LD) analysis with an r2$0.8
This case-control study was approved by the Ethical Committee was further applied to filter these functional SNPs and 7
Review Board of Nanjing Medical University, China. All the (rs12596992, rs13336412, rs16971312, rs16971436, rs17680796,
participants enrolled in the study gave their written informed rs6499600, rs8049936) of which were remained. Additionally,
consent. previously reported single nucleotide polymorphism (SNP)
In brief, the cases were incident AF patients recruited from rs2106261 in ZFHX3 was selected as well for this study. As a
Department of Cardiology, the First Affiliated Hospital of Nanjing result, 8 loci were finally determined to perform genotyping.
Medical University from June 2010 to August 2013. All AF cases
in the study were confirmed according to the diagnostic criteria, SNP genotyping
2011 ACCF/AHA/HRS focused updates incorporated into the Blood samples were drawn from study participants and genomic
ACC/AHA/ESC 2006 guidelines for the management of patients DNA was isolated from EDTA-preserved whole blood, using the
with atrial fibrillation [3]. Physical examinations were carried out standard phenol-chloroform method [17]. The genotyping was
by expert cardiologists using routine 12-lead electrocardiography performed by using the middle-throughput iPLEX Sequenom
(ECG), and/or ambulatory ECG recordings. According to clinical MassARRAY platform (Sequenom, Inc, San Diego, CA, USA).
characteristics, AF can be classified into paroxysmal AF (episodes All SNPs were successfully genotyped with call rates .95%.
that generally last 7 days or less), persistent AF (episodes that
sustain beyond 7 days) and permanent AF (ongoing long-term Statistical analysis
episodes, in which cardioversion has failed or has not been The standard independent samples t-test was used to compare
attempted). Young AF individuals (under 60 years) without clinical continuous variables and the x2 test was used to compare
or echocardiographic evidence of cardiopulmonary disease, categorical variables. The Hardy-Weinberg equilibrium compar-
including hypertension were considered as lone AF [16]. The ing the observed genotype frequencies with the expected ones was
control subjects were genetically unrelated inpatient individuals determined by the x2 test in the control group. Odds ratios (ORs)
from multiple departments of the First Affiliated Hospital of and 95% confidence intervals (CIs) were calculated using logistic
Nanjing Medical University. All the controls were confirmed to be regression analyses in the additive model to assess the strength of
free of AF based on ECG or medical files at the time of the associations between the variants genotypes and AF risk. The
enrollment. heterogeneity of associations between subgroups was assessed
We also collected general and clinical information from medical using the x2-based Q-test. All statistical analyses were performed
recording files in the hospital system such as age, gender, and using STATA 12.0 software (Stata Corporation, College Station,
history of hypertension, diabetes, coronary artery disease (CAD), TX, USA) and P,0.05 was considered significant.
and hyperthyroidism. Patients with hyperthyroidism, severe
cardiac dysfunction (NYHA Class IV) and advanced age (beyond
Results
90 years) were excluded in both AF and control groups. All the
enrolled individuals are of the ethnic Chinese Han origin by self- Characteristics of the Study Population
report. A total of 1,593 Chinese Han origin individuals were recruited
in this study, including 597 AF patients and 996 non-AF controls.
SNP selection The demographic characteristics of cases and controls are
We first used public HapMap SNP database (phase II + III Feb summarized in Table 1. As shown, there were no significant
09, on NCBI B36 assembly, dbSNP b126) to search SNPs that differences for the distributions of age and gender between cases
localized within the gene region of ZFHX3 (including 10 kb up- and controls (P values were 0.278 and 0.630, respectively). The
1.48610210
59.0610.2 years, respectively. Male proportion was 66.5% and
4.2861024
67.7% in AF group and control group, separately. Among cases,
PFDRc
64.2% patients were paroxysmal AF, 32.8% were persistent AF,
0.104
0.316
0.263
0.112
0.144
0.233
while others were permanent AF. And patients with lone AF
accounted for a small part (11.9%) of all AF cases. Considered as
common risk factors for AF, hypertension, diabetes, and CAD
211
1.0761024
were more prevalent in cases than controls (P,0.05).
1.85610
SNP, single nucleotide polymorphism; AF, atrial fibrillation; MAF, minor allele frequency; PHWE, P values for HardyWeinberg equilibrium tests in control groups; OR odds ratio; CI confidence interval.
0.039
0.316
0.056
0.175
0.23
0.09
Pb
0.73(0.630.86)
1.71(1.462.00) genotype frequencies for these SNPs were all in agreement with
1.08(0.931.26)
0.85(0.721.00)
1.15(0.981.35)
b
1.1(0.941.27)
OR (95%CI) and P values were derived from logistic regression analysis in the additive model adjusting for age, gender, hypertension, diabetes and coronary artery disease.
revealed that functional SNPs rs6499600 and rs16971436 were
associated with decreased risks of AF in the additive model
(adjusted OR = 0.73, 95% CI: 0.630.86, P = 1.0761024; adjusted
OR = 0.74, 95% CI: 0.560.98, P = 0.039, respectively). In
addition, rs2106261 showed a robust association with an increased
PHWE
0.78
0.62
0.28
0.18
0.21
0.11
0.46
0.6
ations with AF risk while rs16971436 lost its association with the
risk of AF. There were no obvious evidences of significant
association between other 5 SNPs and AF risk.
0.37
0.45
0.29
0.09
0.42
0.32
0.33
0.3
Stratification Analysis
In the stratification analysis, we further evaluated the associa-
MAF(cases)
significant protective effect than patients who were free of CAD for
132/458/382
195/500/301
164/506/317
114/435/447
78/426/492
11/152/833
84/438/472
99/446/451
Controlsa
Discussion
In this study, we investigated the associations between
polymorphisms of ZFHX3 and the risk of AF in a case-control
124/297/173
110/299/184
96/252/236
43/226/326
60/266/268
75/275/244
61/246/284
A/G
G/A
C/G
A/C
G/T
T/C
T/C
4
CAD
Yes 3/27/17 10/26/15 0.81(0.391.69) 0.579 0/2/46 0/10/41 0.13(0.020.71) 0.001 7/23/17 2/26/23 1.33(0.642.76) 0.486
No 72/248/227 154/480/302 0.74(0.630.88) 3/69/477 11/142/792 0.81(0.611.08) 103/276/167 97/420/428 1.72(1.462.03)
A total of 3 SNPs were significantly associated with the risk of analysis was restricted to individuals of Chinese Han descent, and
AF (rs2106261, rs6499600 and rs16971436) in our population. therefore, the findings may not be generalizable to individuals of
The SNP rs2106261 locates in the first intron of ZFHX3 and has other races and ethnicities. Secondly, as echocardiography results
been reported to confer increased risk of AF in European and were unable to be obtained from every participant, left ventricular
Chinese populations [15,21]. Even though the mechanism of ejection fraction (LVEF) values were not measured to evaluate
rs2106261 conferred increased susceptibility of AF is little known, cardiac function in both groups. Also, we did not analyze the
one plausible hypothesis is that it may alter the expression of impact of SNPs on stroke because some patients enrolled in the
ZFHX3 by modulating regulation of ZFHX3 transcription or pre- study had not performed head CT or MRI scans. Furthermore,
mRNA splicing because intronic sequences have been found to the way to select potentially functional SNPs as target ones by
play regulatory roles in gene expression recently [22]. The SNP using web-based tool may bring some positive or negative errors.
rs6499600 is located in the seventh intron of ZFHX3. And it may Therefore, the results are required to be further replicated by well-
affect the binding of transcription factors such as ATF6 (activating designed studies in additional large-scale Chinese Han popula-
transcription factor 6), which was predicted by the online tool tions.
SNPinfo (http://snpinfo.niehs.nih.gov/index.html). ATF6 is a key In conclusion, our study investigated the role of genetic variants
transcriptional activator to maintain cellular homeostasis, and of ZFHX3 in AF and two SNPs (rs2106261, rs6499600) showed
inhibition of which induced dilatation of left ventricle and significant associations while rs16971436 conferred a borderline
depression of cardiac function in murine heart [23]. ZFHX3 significant association with AF risk in Chinese Han populations.
rs16971436 is a T to G variant at the codon of 428 of exon 1, However, further large and functional studies are warranted to
resulting in an amino acid alteration from threonine (Thy) to confirm our findings.
proline (Pro). Therefore, we proposed that the missense variant
might lead to the change of ZFHX3 expression, consequently
cause a dysregulation of STAT3 and finally result in altered
Author Contributions
susceptibility of AF. Conceived and designed the experiments: FZ ZH. Performed the
Several limitations of the present study need to be addressed. experiments: Y. Liu BN Y. Lin ZF LZ. Analyzed the data: Y. Liu.
Firstly, we did not replicate the results in additional individuals, Contributed reagents/materials/analysis tools: BN XC. Wrote the paper:
Y. Liu BN FZ ZH.
this may contribute to potential false positive errors. The present
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