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Abstract
Conjugation of primary amino and hydroxylamino groups with acetate, catalyzed by acetyl CoA-dependent arylamine
acetyltransferase NAT. enzymes, may play an important role in the intricate series of metabolic pathways that produce or
prevent toxicity following exposure to homo- and heterocyclic arylamine and hydrazine xenobiotics. Two independently
regulated and kinetically distinct human acetyltransferases are now known to exist, namely NAT1 and NAT2. Interindividual
variation in NAT2 function is associated with the classical isoniazid acetylation polymorphism which was discovered over
forty years ago. At last count, fifteen variant alleles at the NAT2 gene locus have been linked to the isoniazid acetylator
phenotype, and each of these can be identified in population studies using specific PCR-based genotyping tests. On the
other hand, NAT1 shows kinetic selectivity for compounds whose disposition is unrelated to the classical isoniazid
acetylation polymorphism. NAT1 expression is also phenotypically variable in human populations, at least in part due to
allelic differences at the NAT1 gene locus. Nine NAT1 variant alleles have been described to date, of which NAT1) 14 and
NAT1) 15 clearly produce defective NAT1 proteins and lead to functional impairment in the metabolism of NAT1-selective
substrates both in vivo and in vitro. On the other hand, it has been reported that the NAT1) 10 variant associates with
eleated NAT1 activity and increased risk for cancers of the bladder and colon. Because of the important toxicologic
consequences of allelic variation in NAT1 and NAT2 function for the metabolic activation of arylamine and heterocyclic
amine procarcinogens, further studies are needed to improve our understanding of the extent of NAT allelic variation, to
determine the functional capacity of each variant gene product, and to develop accurate methods of detecting them in
population and epidemiological studies.
Fig. 1. Potential pathways of arylamine detoxication and metabolic activation. See text for details. Enzyme abbreviations are: NAT,
arylamine N-acetyltransferase; OAT, O-acetyltransferase catalysed by NATs.; NOAT, intramolecular N,O-acyltransferase also catalysed
by NATs.; CYP1A2, cytochrome P4501A2; PHS, prostaglandin H synthase; UGT, UDP-glucuronosyltransferase; SULT, sulfotransferase.
D.M. Grant et al.r Mutation Research 376 (1997) 6170 63
curonide esters that decompose to nitrenium ions metabolism of xenobiotics. Many such pharmacoge-
Chou et al., 1995; Orzechowski et al., 1994.. Fi- netic variants of drug metabolism Kalow and Grant,
nally, microsomal deacetylases DAC. can influence 1995a,b. are monogenic and polymorphic. That is,
levels of substrates for activating pathways by re- allelic variation occurs at a single gene locus, and
versing the acetylation reaction. Indeed, the tumori- produces distinguishable phenotypes with the rarest
genicity of 2-acetylaminofluorene AAF. may re- one occurring at a frequency of at least 1% in the
quire its deacetylation to the arylamine Aune et al., population. Such phenotypes, usually derived from
1985., which is then presumably activated by path- drug pharmacokinetic or metabolite excretion param-
ways such as those described above. eters, subdivide populations into so-called extensive
metabolizer and poor metabolizer groups.
From the discovery in the 1950s that the inci-
3. The human acetylation polymorphism dence of side effects from isoniazid was related to a
genetic polymorphism that impaired the drugs elim-
Drug-metabolizing enzymes possess both isoform ination in about 5560% of Caucasian individuals,
multiplicity and overlapping substrate selectivity to in vivo and in vitro studies have shown that the
ensure versatility in the organisms ability to bio- disposition of several arylamine and hydrazine drugs
transform most of the chemicals to which it is ex- and xenobiotics is affected by the same defect re-
posed. However, another important determinant of viewed in Evans, 1992... This impairment is due to
enzyme diversity is allelic variation, since the exis- a reduction in the rate of N-acetylation by a cytoso-
tence of allelic forms of a particular gene product lic CoASAc:arylamine N-acetyltransferase enzyme
can lead to marked interindividual differences in the NAT; EC 2.3.1.5., in a two-step reaction involving
Table 1
a
Variant alleles at the human NAT2 gene locus
b
Allele Phenotype Nucleotide change Amino acid change Consequence
191 282 341 481 590 803 857 Expressed In vivo
c
yM yF y yK yT qD yB
NAT2) 4 Rapid G C T C G A G none wild-type.
NAT2) 5A Slow C T Ile 114 Thr x Vma x x NAT2
NAT2) 5B Slow C T G Lys 268 Arg
NAT2) 5C Slow C G
NAT2) 6A Slow T A Arg 197 Gln x stability x NAT2
NAT2) 6B Slow A
NAT2)7A Slow A Gly 286 Glu x stability x NAT2
NAT2)7B Slow T A affinity
NAT2) 12A Rapid G Lys 268 Arg None None
NAT2) 12B Rapid T G
NAT2) 13 Rapid T
NAT2) 14A Slow A Arg 64 Gln x stability x NAT2
NAT2) 14B Slow A T
NAT2) 17 Unknown A434 C Gln145 Pro Unknown Unknown
NAT2) 18 Unknown A845 C Lys 282 Thr Unknown Unknown
a
Adapted from Vatsis et al. 1995..
b
Only changes from the wild-type NAT2 ) 4 . sequence top line. are indicated. Nucleotide substitutions shown in boldfaced italics change
the amino acid indicated and have a functional consequence, those in regular italics change an amino acid with no or unknown effect on
NAT2 function, and those in regular font are silent. Thus substitutions at positions 191, 341, 590 and 857 are diagnostic for defective NAT2
function and hence for the slow acetylator phenotype.
c
Letters and symbols underneath positions of nucleotide changes indicate alterations in naturally-occurring restriction sites that accompany
the mutations indicated in the columns below. Negative sign indicates loss, and positive sign indicates gain, of the following sites:
M s MspI; F s FokI; K s KpnI; T s TaqI; D s DdeI; B s BamH I.
64 D.M. Grant et al.r Mutation Research 376 (1997) 6170
Fig. 3. In vitro stabilities of selected NAT2 allelic variants expressed in E. coli. Lysates were prepared from bacterial strains induced to
express recombinant allelic variant forms of NAT2 as described Dupret and Grant, 1992. and rates of acetylation of the NAT2-selective
substrate sulfamethazine were measured at the times indicated following incubation at 378C. The three NAT2 5 variants left panel. showed
similar stabilities to the wild-type NAT2 4, while NAT2 6A, NAT2 7B and NAT2 14A right panel. were markedly less stable.
66 D.M. Grant et al.r Mutation Research 376 (1997) 6170
Table 3
a
Interethnic comparison of NAT2 allele frequencies
Ethnic group no. of alleles. Rapid acetylator alleles Slow acetylator alleles G 857A
NAT2)7B G 857A. is somewhat more prevalent in gested that allelic variation at this gene locus indeed
Orientals than in Caucasians. NAT2) 14 G 191A. is exists Vatsis and Weber, 1993; Vatsis et al., 1995..
common in both American and native African Blacks Eight NAT1 allelic variants have so far been reported
but very low or undetectable in other ethnic groups. Table 4., and six additional forms are currently
Finally, our recent studies in a Canadian Inuit popu- being characterized at the functional level H.J. Lin,
lation unpublished observations. indicate that this personal communication.. However, the functional
ethnic group, which is likely of Oriental origin, significance of many of these sequence variations is
possesses the highest frequency 0.789. of the wild- as yet unknown. We developed in vivo and in vitro
type NAT2) 4 allele so far observed. tests for NAT1 function in man using PAS as a
probe drug, and used them in a population pharma-
cogenetic study of a healthy sample from the Toronto
5. Variation at the NAT1 gene locus population Hughes et al., 1997.. We observed that
in vivo and in vitro indices of PAS acetylation were
Cloning and expression studies Blum et al., 1990; highly variable, and allowed for the identification of
Grant et al., 1991. had revealed the existence of a persons predicted to have either deficient or elevated
second human NAT enzyme, NAT1, which shows NAT1 function. One subject with severely defective
kinetic selectivity for compounds, such as p-amino- PAS acetylation possessed two novel NAT1 variants,
salicylic acid PAS., whose disposition is unrelated NAT1) 14 and NAT1) 15. NAT1) 14 encodes a
to the classical isoniazid acetylation polymorphism protein with a single amino acid change Arg 187
governed by the NAT2 gene locus. In vitro studies Gln. that decreases its affinity for PAS by 1520-fold
Cribb et al., 1991; Grant et al., 1991. showed that Fig. 4., while NAT1) 15 has a premature stop
NAT1 and NAT2 were independently expressed but codon Arg 187 Stop. that produces a truncated,
that NAT1 expression was also variable in human inactive protein. We also detected a third, previously
populations. In addition, random sequencing of am- identified variant, NAT1) 11 Vatsis and Weber,
plified NAT1 genes from human genomic DNA sug- 1993.. However, it is not clear whether NAT1) 11
D.M. Grant et al.r Mutation Research 376 (1997) 6170 67
Table 4
a
Variant alleles at the human NAT1 gene locus
b
Allele Nucleotide change Amino acid change Consequence
y 344 y40 459 559 560 640 1075 1088 1091 1095 Expressed In vivo
NAT1) 4 C A G C G T ) T C wild-type
NAT1) 3 A none unknown
NAT1) 5 many unknown
NAT1) 10 A A none NAT1?
NAT1) 11 T T A G D9 A Ser 214Ala none x NAT1?
NAT1) 14 ? ? A A A Arg 187 Gln x affinity x NAT1
NAT1) 15 ? ? T A A Arg 187 Stop no NAT1 x NAT1
NAT1) 16 q3A A none unknown
a
From Vatsis et al. 1994, 1995., Hughes et al. 1997.. Six additional variant alleles not listed here H. Lin, personal communication.
contain nucleotide substitutions that alter single amino acid residues and three of these give rise to NAT1 proteins devoid of catalytic
activity.
b
Only changes from the wild-type NAT1) 4 . sequence top line. are indicated. Nucleotide substitutions shown in boldfaced italics change
the amino acid indicated and have a functional consequence, those in regular italics change an amino acid with no or unknown effect on
NAT1 function, and those in regular font are silent. The asterisk at position 1075 represents a trinucleotide repeat, 9 nucleotides of which
are deleted in the NAT1) 11 allele.
alters NAT1 function, since 1. the amino acid change populations, and have found each at a low but signif-
in this variant Ser 214Ala. does not alter the activity icant frequency 0.01 to 0.03. in Caucasians.
of the expressed enzyme, and 2. subjects that are On the other hand, recent studies suggest that
heterozygous for this allele have only slightly lower another previously published NAT1 allelic variant,
NAT1 phenotyping ratios than the average of the NAT1) 10, produces eleated NAT1 activity in
remaining population Hughes et al., 1997.. This bladder and colon tissues Bell et al., 1995a., in-
allele possesses both 5X and 3X non-coding mutations creased carcinogen-DNA adduct binding in bladder
Table 4. whose functional significance is as yet Badawi et al., 1995., and increased risk for colorec-
unknown. We have devised genotyping tests to de- tal Bell et al., 1995b. and bladder cancers Taylor et
tect NAT1) 11, NAT1) 14 and NAT1) 15 in human al., 1995.. These interesting preliminary observations
Fig. 4. A. Kinetics of p-aminosalicylic acid PAS. acetylation in vitro by whole blood lysates from a homozygous wild-type
NAT1) 4 r NAT1) 4 . subject and from a subject Subject 244. possessing the variant alleles NAT1) 14 and NAT1) 15. B. Kinetics of
PAS acetylation in vitro by recombinant NAT1 variants expressed in E. coli. The affinity of NAT1 14 for PAS is about 15-fold lower than
that of NAT1 4 both in blood and in the heterologous expression system. Subject 244 displays characteristics of NAT1 14 function in vivo
because the remaining allele in this individual, NAT1) 15, produces a truncated protein that is devoid of any catalytic function Hughes et
al., 1997..
68 D.M. Grant et al.r Mutation Research 376 (1997) 6170
only NAT2-based variation. This may explain the transferase 1 gene NAT1. increases risk of colorectal cancer,
fact that the association between the NAT2 slow Cancer Res., 55, 35373542.
Blum, M., D.M. Grant, O.W. McBride, M. Heim and U.A. Meyer
acetylator phenotype and bladder cancer incidence is 1990. Human arylamine N-acetyltransferase genes: isolation,
not particularly strong, and several studies have found chromosomal localization and functional expression, DNA
no association. Indeed, in light of the model outlined Cell Biol., 9, 193203.
in Fig. 5, it is tempting to hypothesize that individu- Blum, M., A. Demierre, D.M. Grant, M. Heim and U.A. Meyer
1991. Molecular mechanism of slow acetylation of drugs and
als with a more precisely defined metabolizer phe-
carcinogens in humans, Proc. Nat. Acad. Sci. USA., 88,
notype of combined high CYP1A2 or PHS., low 52375241.
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risk for developing bladder cancer following expo- formation: evidence for arylnitrene involvement in the reac-
sure to aromatic amine procarcinogens. Further tions of an N-acetoxyarylamine, Chem. Res. Toxicol., 7,
mechanistic and epidemiological studies are required 684689.
Cartwright, R.A., H.J. Rogers, D. Barham-Hall, R.W. Glashan,
to more fully examine the roles of these interacting R.A. Ahmad, E. Higgins and M.A. Kahn 1982. Role of
pathways in producing altered risk for arylamine-in- N-acetyltransferase phenotypes in bladder carcinogenesis: a
duced toxicity. pharmacogenetic epidemiological approach to bladder cancer,
Lancet, 2, 842846.
Chou, H.-C., N.P. Lang and F.F. Kadlubar 1995. Metabolic
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Acknowledgements
cyclic amines by human sulfotransferases., Cancer Res., 55,
525529.
Original work from the authors laboratory was Cribb, A.E., D.M. Grant, M.A. Miller and S.P. Spielberg 1991.
supported by operating grants from the Medical Re- Expression of monomorphic arylamine N-acetyltransferase
search Council of Canada and the National Cancer NAT1. in human leukocytes, J. Pharmacol. Exp. Ther., 259,
Institute of Canada, and by personal salary support 12411246.
Deguchi, T., M. Mashimo and T. Suzuki 1990. Correlation
from the Medical Research Council of Canada, The between acetylator phenotypes and genotypes of polymorphic
Natural Sciences and Engineering Research Council arylamine N-acetyltransferase in human liver, J. Biol. Chem.,
of Canada, the Ontario Ministry of Health, and the 265, 1275712760.
Research Training Committee of the Hospital for
Delomenie, C., D.M. Grant, P. Mathelier-Fusade, C. Jacomet, F.
Sick Children. Leynadier, E. Jacqz-Aigrain, W. Rozenbaum, R. Krishnamoor-
thy and J.-M. Dupret 1994. N-acetylation genotype and risk
of severe reactions to sulfonamides in AIDS patients, Br. J.
Clin. Pharmac., 38, 581582.
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