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TAH0010.1177/2040620715614529Therapeutic Advances in HematologyHB Ommen
Abstract: Several disease-monitoring techniques are available for the physician treating acute
myeloid leukaemia (AML). Besides immunohistochemistry assisted light microscopy, the past
20 years have seen the development and preclinical perfection of a number of techniques,
most notably quantitative polymerase chain reaction (PCR) and multicolor flow cytometry.
Late additions to the group of applicable assays include next generation sequencing and
digital PCR. In this review the principles of use of these modalities at three different time
points during the AML disease course are discussed, namely at the time of treatment
evaluation, pretransplantation and postconsolidation. The drawbacks and pitfalls of each
different technique are delineated. The evidence or lack of evidence for minimal residual
disease guided treatment decisions is discussed. Lastly, future strategies in the MRD field are
suggested and commented upon.
Keywords: Minimal residual disease, Preemotive treatment, AML, flow cytometry, qPCR, NGS
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Therapeutic Advances in Hematology 7(1)
Thus, during and after treatment, patients are highest degree. These include when the leukemic
monitored to observe the treatment responses. In clone is disappearing, such as during treatment;
this discipline also, a rapidly expanding set of when it is imperative that the leukemic burden is
options is available. The choice between different low, such as before allogeneic treatment; or when
disease-monitoring techniques and the possibili- the leukaemia is reappearing after either chemo-
ties and caveats of these in the treatment and fol- therapy or transplantation consolidation.
low up of AML are the topics of this review. Acute
promyelocytic leukaemia presents a special case
that will not be covered by this review. Treatment efficacy evaluation
As the aim of cytoreductive treatment is to eradi-
cate the leukemic clone, it is natural to test the
Disease surveillance in the genomic age efficacy of this treatment by MRD detection tech-
Since 1961 [Freireich et al. 1961], the achieve- niques. In the early 2000s a large number of sin-
ment of the state where less than 5% of bone mar- gle-center studies confirmed the prognostic value
row blasts present by morphological examination of a low MRD measurement during treatment,
by light microscopy [morphological complete either in a selected cohort based on single molec-
remission (CR)] has been considered to be of key ular aberrations [Schnittger et al. 2003, 2007;
importance in the long-term prognostication of Stentoft etal. 2006] or using more broadly appli-
patients with AML. Since then, technical develop- cable MRD markers [Ommen etal. 2008; Cilloni
ment has produced a number of advanced tech- etal. 2008, 2009]. In the last 58 years the results
niques to further assess the presence of residual of a number of pivotal multicenter studies have
disease. In the 1980s and early 1990s, the term been published as well [Freeman et al. 2013;
minimal residual disease (MRD) was coined to Terwijn et al. 2013; Kronke et al. 2011]. While
distinguish residual disease as assessed morpho- some studies identify a threshold below which
logically from that detected with more sensitive relapse risk is low, most commonly 0.1% or 1%,
techniques in patients in CR [Campana and Pui, others were powered to show the linear relation-
1995]. Thus, any technique with a sensitivity ship between declining MRD levels and progno-
beyond that of (immunohistochemistry-assisted) sis. Also controversial is the optimal time point
light microscopy can in the traditional definition for MRD testing. While testing after the first
be used as an MRD detection technique. This course of chemotherapy is most convenient if
dichotomy in disease status as evaluable either by intensification of treatment is necessary, data
standard methods or as MRD is reflected in the from the HOVON group suggest that some
current consensus response criteria report from patients, in CR but MRD positive after the first
2003 [Cheson et al. 2003] in which molecular course of chemotherapy, actually achieve a suffi-
response is included as a provisional response cri- cient MRD decrease after the second course of
terion only [Cheson etal. 2003]. With the steadily chemotherapy, allowing the inclusion of these
growing body of evidence that MRD measure- patients in the MRD-based low-risk arm [Terwijn
ments have prognostic value in AML and with tri- etal. 2013]. Further studies will show if this ben-
als incorporating MRD measurements in decision efit makes up for the obvious risks of administer-
making slowly emerging, we advocate the merging ing an additional course of standard chemotherapy
of the concepts of morphological residual disease to the high-risk patients when prompt treatment
and MRD into the concept of measureable resid- intensification could be advocated.
ual disease to reflect the joining of the MRD con-
cept into standard disease surveillance practice
[Hokland et al. 2015]. Several studies (e.g. the Postchemotherapy early relapse detection
MRC AML17 and AML19 studies) are currently One of the most unsatisfying aspects of disease
investigating the beneficial role of MRD in disease surveillance based on standard methods is in the
surveillance in a large randomized manner to pro- follow up of patients after completion of chemo-
vide definitive evidence for this transition. therapy. Patients can be well, with normal hema-
tological counts, and 14 days later they can
The current use of MRD measurements reflects display signs of relapse with deteriorating bone
its auxiliary status compared with standard mor- marrow function. It is unsurprising that longitu-
phology. MRD measurements are most useful at dinal follow up of patients postchemotherapy
time points when the increased sensitivity com- with the prospect of early relapse detection was
pared with light microscopy is exploited to the an early venue of the MRD technology. Several
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HB Ommen
points have been made in the last 15 years of test- by the transplanted immune system could change
ing and perfecting the techniques. the relapse pattern, rendering the relapses of two
molecularly similar leukaemias different in a trans-
First, evidence suggests that above a certain planted and a nontransplanted host.
threshold of MRD positivity, relapse is certain to
occur [Ommen etal. 2010; Yin etal. 2012]. This
condition is commonly referred to as molecular Methods
relapse. Second, surveillance can be done substi-
tuting bone marrow aspirations for blood sam- Polymerase chain reaction
ples, at least in some cases [Cilloni et al. 2008; The exponential nature of the polymerase chain
Yin et al. 2012; Ommen et al. 2010, 2014; reaction (PCR) techniques allows for very high
Abildgaard et al. 2013]. Third, diligence is sensitivities making these techniques ideal for
required in post-treatment sampling, as many MRD measurements, especially upon the intro-
relapses will occur too fast if patients are only duction of the quantitative PCR systems [Kubista
occasionally sampled [Ommen etal. 2008, 2010, etal. 2006]. Recently, development of microfluid-
2014, 2015; Weisser etal. 2005]. Taken together, ics-based systems, such as digital PCR, has
early relapse diagnostics is now possible, but evi- allowed for the development of assays with a sen-
dence is still scarce on how to act upon molecular sitivity that is even higher (up to 10 fold) than
relapse. that of the traditional Taqman probe (or similar)
based quantitative PCR (qPCR) systems
[Hindson et al. 2013]. Additionally, qPCR sys-
MRD in the allotransplant setting tems offer relatively easy standardization, and
The use of MRD measurements in the allotrans- standardized clinically tested assays [Kronke etal.
plant setting is a special case. Several studies 2011] exist for the commonest fusion transcripts
report the adverse effect of MRD positivity prior [Gabert etal. 2003], mutated genes and overex-
to receiving the transplant [Jacobsohn etal. 2009; pressed genes [Cilloni etal. 2009].
Walter et al. 2011; Rossi et al. 2015]. These
patients are invariably patients who have recently
been heavily treated with chemotherapy. Thus, Fusion transcripts
this is a group of patients with suboptimal In AMLs harboring chromosomal translocations
response to chemotherapy, similar to that noted such as t(8;21), inv(16), t(6;9), t(9;11) and oth-
in ordinary treatment response evaluation. In ers, the unique fusion transcripts arising from
contrast to treating these patients using chemo- these translocations (RUNX1RUNX1T1,
therapy alone [Terwijn et al. 2013], allogeneic CBFBMYH11, DEKNUP214, MLLMLLT3)
transplantation has the potential to save 1520% can be used as leukaemia-specific disease markers
of these patients [Terwijn etal. 2013]. Based on [Gabert et al. 2003; Ostergaard et al. 2004a;
this, MRD positivity will not preclude transplan- Tobal et al. 2004]. Unfortunately, only about
tation, but could in the future result in the imple- 30% of young adults and older adults with AML
mentation of additional measures reserved for harbor translocations [Grimwade and Freeman,
high-risk patients. 2014] and even the commonest fusion transcripts,
RUNX1RUNX1T1 and CBFBMYH11 are not
In the post-transplant period, the use of MRD seen in more than 5% of cases in population-
measurements is similar to that in patients who based surveys [Grimwade and Freeman, 2014].
have completed chemotherapy consolidation. A As such, a large panel of primer-probe sets is nec-
couple of important differences are important to essary to cover only a small fraction of patients
note. The cohort of higher-risk patients combined with AML, at least in adult AML. For childhood
with the delayed onset of the graft versus leukaemia AML, CBF leukaemias, but especially the MLL
(GvL) effect means that those patients who do (HUGO gene) translocations, are commoner,
relapse, relapse earlier than patients who have not allowing for a coverage of about 51% using fusion
received transplantation [Goswami et al. 2015]. transcripts alone [Grimwade and Freeman,
Also, the reconstitution of the donor immune sys- 2014]. Fusion-based MRD measurements are
tem in the new host and the instigation of the GvL among the most sensitive methods available. The
effect fundamentally change the conditions under sensitivity varies depending on the average num-
which the early relapse occurs. At least theoreti- ber of fusion transcripts per leukemic cell, but
cally, the enhanced immune surveillance exercised often reaches 1105 [Gabert etal. 2003].
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Therapeutic Advances in Hematology 7(1)
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HB Ommen
The most commonly used genes as well as two presence of normal cells in the LAP. However, in
published sets of genes and the sensitivities that flow cytometry, the MRD analyst has a lot more
can be achieved using these are summarized in control of which cells are included in the com-
Table 1. parison to the malignant phenotype than in PCRs
when cells are lyzed in the nucleotide (DNA or
RNA) purification process. As immature cells are
Flow cytometry uncommon in healthy bone marrow, the addition
Flow cytometry becomes an obvious MRD meas- of an immature marker to the LAP usually results
uring tool based on the high-throughput nature of in normal cell pollution below 0.05%, effectively
the technique and the possibility for very exact eliminating the problem [Terwijn etal. 2013].
cell characterization offered by multicolor proto-
cols. The principle is to identify leukaemia-asso- In many cases surface antigen expression on the
ciated phenotypes (LAPs) when leukemic cells leukemic clone varies, probably depending on dif-
differ from the large majority of healthy hemat- ferent states of maturation of the individual clonal
opoiesis bone marrow or blood cells. The differ- cells. Thus, a given LAP will often not comprise
ing expression of different LAPs can be divided all leukemic cells. This raises the problem of
into four different types: cross-lineage expression, whether the cells selected actually have the poten-
when T-cell, B-cell or natural killer cell markers tial to give rise to a relapse. To amend this, the
are expressed on the myeloid blasts; overexpres- inclusion of stem cell markers in the LAPs has
sion, when normally expressed antigens are been proposed [Larsen etal. 2012; Van Rhenen
expressed to a higher degree on each individual etal. 2007]. This may hamper theoretical sensi-
cell; lack of expression, when normally expression tivity as stem cells in the leukemic clone are
antigens are lacking; or finally asynchronous uncommon, but has been shown to perform as
expression, when immature and mature myeloid well as MRD assays based on standard LAPs or
antigens are expressed together in an aberrant WT1 overexpression [Roug etal. 2013].
manner [Kern etal. 2010]. Finding a LAP to all
AMLs requires an extensive panel of antibodies
[Kern etal. 2010], but 8090% of patients can be Next generation sequencing
followed using a reasonably sized panel [Freeman Next generation sequencing (NGS) offers the
etal. 2013; Terwijn etal. 2013]. The most com- opportunity for detection and follow up of a large
mon antigens included in LAPs and the frequen- number of aberrations. This allows not only clas-
cies of their possible use are shown in Table 2. sic MRD follow up but also the inclusion of
potentially important changes on the subclonal
level. As virtually all AMLs harbor genetic muta-
LAP selection: immature and stem cell tions and mutational hotspots are not necessary
markers for NGS-based MRD measurements, NGS could
Flow cytometric based MRD detection uses the potentially be applicable in all AMLs. There is a
same principles as overexpressed gene MRD caveat, however. The current base error rate
detection and the sensitivity is restricted by the means that the sensitivity level is about 1%
Table 2. Antigen basis for LAPs in AML. Applicability and detection thresholds in table from Freeman etal. [2013].
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Therapeutic Advances in Hematology 7(1)
[Kohlmann etal. 2014; Luthra etal. 2014], which this will increase the need for broader antibody
cannot compete with any of the above-mentioned panels and the cost of the analysis. Stem cell
MRD measurements techniques, save perhaps marker based MRD follow up has been reported
the worst overexpressed gene-based assays. to be stable at relapse [Roug et al. 2013] and
Technical development is currently trying to cir- another possibility is to include some of these
cumvent this [Hokland et al. 2015] and when markers in the LAPs.
these endeavors are successful, NGS-based MRD
measurements could be a very powerful tool
indeed. Detection of premalignant clones
The opposite of the risk of using mutations not
present in the relapsing subclone as MRD marker
Pitfalls in MRD assessment is using a marker that is present in the premalig-
nant lesion of the patient.
Phenotype shifts
The dominating malignant clone at diagnosis is Thus, Ploen and colleagues found mutated
often genetically unstable and some genetic evo- DNMT3A to be present in the leukemic cells of a
lution will invariantly occur during disease pro- patient with AML, but also to be continually pre-
gression. Furthermore, subclone selection by sent even after eradication of the leukemic clone
treatment is unavoidable, allowing clones that [Ploen et al. 2014]. The DNMT3A mutation in
are only present in small proportions at diagnosis the described case is probably a marker of mono-
to dominate at relapse. The frequency of pheno- clonal hematopoiesis of unknown significance, as
type shifts differs substantially between different recently described [Jaiswal etal. 2014; Genovese
MRD targets. It is virtually unknown for fusion etal. 2014]. DNMT3A is a commonly seen muta-
transcript and NPM1 based MRD detection to tion in this context, as is TET2. Diligence is
display phenotype shifts, whereas other muta- advised if these MRD targets are used as MRD
tions such as FLT3-ITD and WT1 mutation dis- markers to ensure that recurring MRD positivity
appears or is added at relapse in up to 20% of actually represents recurrence of the leukemic
cases [Nyvold et al. 2006; Bachas et al. 2010]. clone.
The recent paper by Lindsey and colleagues
offers an explanation for this [Lindsey et al.
2015]. The authors divide AML mutations into Post-treatment positivity
MDS related (e.g. ASXL1, SRSF2), pan-AML Another observation is that when testing
(e.g. RUNX1, CEBPA, TET2, WT1, FLT3) and patients postconsolidation not all MRD-
de novo AML related (e.g. NPM1, CBF leukae- positive patients relapse [Yin et al. 2012;
mia translocations, MLL translocation). De novo Ommen etal. 2010, 2014, 2015]. There seems
AMLs contain relatively few mutations and these to be a certain threshold below which relapse is
mark the leukemogenic events in these patients, not certain to occur, both for fusion transcript
whereas pan-AML mutations can occur both as based [Yin et al. 2012; Ommen et al. 2010,
leukomogenic and secondary events, making 2014, 2015], mutation based [Kronke et al.
these markers more prone to loss because of 2011] and flow cytometry based MRD detec-
alternative clone outgrowth. This is not to say tion [Terwijn et al. 2013]. This phenomenon
that a mutation classified by Lindsey and col- could have several possible explanations. First,
leagues as pan-AML cannot be a very useful the PCR-based positivity could be simply due
MRD marker, merely to emphasize the power of to detection of more mature cells not capable of
this model to explain the findings that phenotype producing a relapse. If so, stem cell based flow
shifts are more common for some mutations than cytometric follow up should not display this
for others. feature. Further research will show whether this
is the case. Second, the low level of positivity
As immunophenotypic markers are not part of could represent a low level of residual leukae-
the malignant process but rather a product of the mia held in check by the immune system. The
disturbed cell homeostasis, these markers are observation that the threshold for relapse is
among those most commonly lost [Feller et al. higher in transplanted patients [Ommen et al.
2004; Voskova etal. 2004]. This can be amended 2014] could support this notion, but further
following patients using several markers to lessen research is needed before any firm conclusions
the risk of them all disappearing at once. However, can be drawn on this point.
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HB Ommen
Status on the current evidence for the use of completed their assigned treatment (see Table 3)
MRD assessments in the clinic [Zhu et al. 2013]. Naturally, a study like this is
How can MRD diagnostics improve the manage- prone to selection bias, especially in the arm
ment of patients with AML in morphological CR? where patients did not receive transplantation
Consider a patient at high risk based on pretreat- despite their risk status recommending this treat-
ment factors, patient specific or leukaemia spe- ment. The authors showed that the groups were
cific. If this patient experiences a very good comparable based on age, sex and comorbidities,
molecular response to induction therapy should but as always, in an unrandomized study,
consolidation be deescalated and transplantation unknown biases are not accounted for.
avoided? Or is it in such patients that transplanta-
tion does actually have a chance to provide a cure? Currently the UK MRC AML18 trial is recruiting.
This trial contains true randomization between
Consider the patient consolidated with chemo- two different kinds of intensified treatment in
therapy experiencing a molecular relapse. Should patients who are in the MRD high-risk group and
preemptive treatment be started prior to frank has the potential to further research on MRD-
relapse? Or should this life-threatening therapy be directed treatment intensification significantly.
reserved for frank relapse?
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Therapeutic Advances in Hematology 7(1)
Figure 1. Relapse kinetics of different AML subtypes and relation to treatment onset.
Relapse kinetics from Ommen and colleagues (several papers) [Ommen etal. 2010, 2014, 2015] and Yin etal. [2012]. Time to
treatment onset for azacitidine from Silverman etal. [2011]. Time to treatment onset for chemotherapy and GvL effect based
on common clinical observations (disappearance of blasts after first course of chemotherapy, full chimerism often 3 months
post transplantation). AML, acute myeloid leukaemia; GvL, graft versus leukaemia.
treatments were too heterogeneous and the Another possibility is a demethylating agent, even
patient cohort too small to draw any firm conclu- if this option is only attractive in patients in whom
sion. Patients who re-entered molecular CR sufficient time is available from molecular to clini-
invariably relapsed, but the duration of response cal relapse for the treatment effect of these agents
was several hundred days in some cases. to commence (see Figure 1). Sockel and col-
leagues administered azacitidine upon molecular
In the venue of post-transplanted patients, Pozzi relapse of patients with NPM1 mutation. In 7 of
and colleagues were able to administer DLI in 10 patients, the authors observed a response,
17/38 patients with molecular relapse [Pozzi etal. either as renewed molecular remission or as a
2013]. The survival was superior in the DLI delayed time to clinical relapse [Sockel et al.
group but the study was not truly randomized; 2011]. As two-thirds of complete responses were
the reason for not administering DLI included seen in previously transplanted patients, the group
random factors such as donor unavailability but initiated the RELAZA trial in which transplanted
also treatment-related factors such as type of patients with molecular relapse were treated with
transplant (cord blood transplants could not azacitidine. Relapse was avoided in 4 of 20 patients
receive DLI). but was delayed a median of 230 days in patients
with relapsing disease [Platzbecker et al. 2012].
In another study of preemptive treatment in Thus, azacitidine seems promising; especially in
CBF-positive AML, seven of eight patients with the allogeneic transplant setting, but can probably
relapsing disease treated with dasatinib upon only cure a minority of patients on its own. To fol-
molecular relapse progressed quickly to clinical low up on this observation, the NOPHO group of
relapse at a speed (median time from molecular pediatric oncologists are currently starting a study
relapse to clinical relapse, 60 days) indistinguish- to test whether azacitidine can be useful as a bridg-
able from published median times from molecu- ing agent between a molecular relapse and an allo-
lar to clinical relapse [Yin et al. 2012; Ommen geneic transplantation.
etal. 2010; Boissel etal. 2011].
Finally, in the UK MRC AML17 and AML19
In conclusion, neither reduced dose chemother- studies, patients are randomized if they have a use-
apy nor tyrosine kinase inhibitor (TKI) seems an ful MRD marker to either MRD follow up or not.
attractive choice for preemptive treatment. The endpoint is overall survival. If successful, this
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HB Ommen
study will probably significantly alter the way we Terwijn et al. 2013], but the use of RUNX1
treat molecular relapse as preemptive treatment RUNX1T1 and CBFBMYH11 [Yin etal. 2012]
will have to be seriously considered in these cases. and NPM1 [Kronke et al. 2011] has been vali-
dated as well. At treatment evaluation, phenotype
shifts are only a lesser concern as selection and
Future directions in the evaluation of MRD outgrowth of a secondary clone has not yet hap-
diagnostics pened. Thus, the expensive procedures of using
multiple LAPs requiring both expenditure of
Comparison of flow cytometry versus PCR multiple antibodies and a significant amount of
versus NGS human capital become less important. The higher
The different methods of MRD detection offer sensitivity of fusion transcript or mutated gene
different advantages and have different disadvan- based PCR assays is not necessarily useful in the
tages. In the case of the choice of method in treat- treatment assessment situation as some residual
ment evaluation, two large trials validated the disease is probably acceptable, at least after the
value of flow cytometry [Freeman et al. 2013; first course of chemotherapy [Terwijn etal. 2013].
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Therapeutic Advances in Hematology 7(1)
In the patients without useful fusion transcripts or could be proposed, but further standardization
mutated genes, several works show that one over- and testing is awaited before implementation.
expressed gene or a combination of these can be
highly prognostically useful in treatment evalua-
tion. Few reports have diligently tested the use of The inclusion of relapse kinetics
flow cytometry in the post-chemotherapy follow When evaluating preemptive treatment options,
up and problems with phenotype shift are espe- the nature of the relapsing AML should be kept in
cially prevalent in this setting. However, at least mind. In the majority of published results for
with the current evidence, LAPs including stem patients treated with preemptive treatment,
cell markers do not seem marred by a great num- relapse was not avoided but delayed (Table 3). In
ber of LAP losses and the problem with low-level some patients not fit for intensive reinduction or
positivity should be reduced using this method, transplantation, or without a suitable donor,
even if evidence does not yet exist. delaying relapse by several months could be a
useful alternative to no treatment.
Flow cytometry and PCR measure two different
things, namely malignant cells and mRNA expres- It is very probable that all molecular relapses
sion in the malignant cells. Using immature or should not be treated in the same way. Slower
stem cell markers, flow cytometry has the poten- relapsing subtypes could be eligible for azaciti-
tial to differentiate between cells of the malignant dine or direct allogeneic transplantation. Others
clone with or without relapse potential. However, will have to be reinduced using intensive chemo-
PCR-based MRD measurement includes infor- therapy or experimental treatment by therapies
mation on cell homeostasis as metabolically active directed at the molecular aberrations in the
cells containing larger amounts of the targeted relapsing leukemic cells since not enough time is
RNA sequences are more easily detected. It is available for the initiation of the effect of the
impossible to theoretically predict which of these slower-acting treatment strategies.
two approaches discriminates best between risk
groups. Future studies will show if one type of
MRD measurement or the other is best at the dif- The perfect as the enemy of the good
ferent MRD measuring situations, but currently A large amount of literature exists to support the
flow cytometry and the PCR-based method are prognostic value of MRD measurements at several
probably equally useful at the treatment evalua- different locations. Current MRD detection tech-
tion time point whereas PCR is probably superior niques are highly sophisticated, allowing detection
in post-chemotherapy follow up. of minute amounts of residual AML cells. Our
current technologies are probably highly sufficient;
it is how we act upon a high MRD measurement
Maintenance therapy in AML that is uncertain. Evolving technologies such as
In patients not fit for transplantation, the use of NGS, digital PCR or other microfluidics-based
MRD measurements could provide the basis for assays or even cell-free DNA-based assays will
intensification of therapy in the form of addition probably refine our MRD measurements further,
of maintenance therapy, currently mainly used in but in the enthusiasm of the current molecular
the acute lymphoblastic leukaemia (ALL) setting. revolution we should not forget our well tested
Also, in frailer patients maintenance therapy could assays for which the possible time to clinical imple-
possibly replace intensive chemotherapy consoli- mentation is shorter. If we use our current under-
dation. Evidence for the use of MRD to direct this standing of MRD and if we get evidence as to how
is currently sparse, but in patients achieving CR to act upon MRD measurements, current tech-
but who are not fit for additional intensive treat- nologies are fully adequate to help our patients.
ment, this could definitely be an option.
Funding
The drugs to use in this setting remain to be deter- This research received no specific grant from any
mined, but both demethylating agents and tyros- funding agency in the public, commercial, or not-
ine kinase inhibitors with activity in AML could for-profit sectors.
be likely candidates. In the case of the use of dem-
ethylating agents, follow up by MRD detection Conflict of interest statement
methods targeting methylations rather than DNA The author declares that there is no conflict of
changes, gene overexpression or flow cytometry interest.
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HB Ommen
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Therapeutic Advances in Hematology 7(1)
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