Documente Academic
Documente Profesional
Documente Cultură
amphibolic pathway and is transcribed by two promoters. Several cis-acting DNA sequences
(control elements) and a variety of regulatory proteins, including a histone-like protein, modulate
the two promoters in a multitude of ways usually found in animals and not in bacteria (Table 1).
The gal operon has revealed several new features of gene-specific transcriptional regulation that
were previously unrecognized. Perhaps such multivalent control mechanisms are required to
regulate the synthesis of amphibolic enzymes.
Table 1. Repression and Activation of Transcription of the gal Operon
Promoters Regulatory protein and DNA elements
GalR, HU GalR or cAMPCRP
GalS
AS
O O
% I E
because the enzyme "stutters" while adding uridine residues present at positions 3-5 of the P2
RNA and not the P1 RNA. RNA polymerase clears the promoter more efficiently and makes
template-encoded normal gal RNA at low UTP concentrations. The involvement of UTP in the
synthesis of UDP sugars by the galactose pathway may be the reason for the control by UTP
(Fig. 1) analogous to the way UTP controls its own synthesis in the pyrimidine operons (20). At
high UTP concentrations, the levels of UDP galactose and UDP glucose are high and inhibit the
synthesis of enzymes, specifically, galactose-1-phosphate uridyltransferase and uridine
diphosphogalactose epimerase, that make them.
5.1. Activation of P2
Activation of P2 by GalR bound to DNA at position _60.5 (_55.5 with respect to P2) parallels the
activation of transcription of several promoters by activators that also bind around position _60
on the DNA and act by enhancing open complex formation (32). An exposed segment (not
necessarily the same segment) of aCTD is contacted by the DNA-bound activator to activate
transcription (33, 34). aCTD is connected to the rest of the RNA polymerase molecule by a
flexible hinge (35, 36). In P2, as in these systems, aCTD binds at the region 40 bp upstream of
P2 (37) (Fig. 4).
6. Gal Isorepressor
The gal operon is also regulated by an isorepressor (GalS). Although GalS does not seem to
repress the gal promoters by DNA looping, the isorepressor does stimulate P2 and repress P1,
the same way that GalR does by binding to OE, except that the effects are weaker. GalR and
GalS modulate a few other operons, including those encoding both high- and low-affinity
galactose active transport systems (12, 13, 38). The degree of regulation by GalR and GalS
varies from operon to operon, perhaps to coordinate galactose metabolism and to transport
efficiently under a wide range of galactose availability.
8. Regulation by cAMP*CRP
Like GalR and GalS, the global regulator cAMP*CRP complex also has differential effects on the
gal promoters; but unlike GalR and GalS, the complex activates transcription from P1 (three- to
fourfold) and represses the same from P2 (10-fold) (14, 16). Unlike a large group of promoters,
such as the lac promoter, in which cAMP*CRP dimer activates transcription by binding at position
_61.5 on DNA and contacting RNA polymerase through the aCTD (see Lac Operon and Cyclic
Amp Receptor Protein (CRP)/Catabolite Gene Activator Protein (CAP)), the regulatory complex
brings about dual control in the gal operon by binding to DNA at position _41.5 (37, 43, 44) (Fig.
5). Whereas it is believed that cAMP*CRP represses P2 by sterically hindering RNA polymerase
binding to the overlapping _35 element of the promoter, the molecular mechanism of activation of
P1 is different from that in the lac promoter. cAMP*CRP stimulates transcription initiation at P1 by
stimulating both RNA polymerase binding (closed-complex formation) and isomerization (45). A
patch of amino acid residues (called region 1) of the promoter distal subunit of the cAMP*CRP
dimer interacts with an a-helix (helix 1) of the aCTD and helps the latter to stretch away from the
N-terminal domain (aNTD) to bind to the region upstream of cAMP*CRP. A different amino acid
residue patch (called region 2) in the promoter proximal subunit of cAMP*CRP interacts with a
different segment of the aNTD. The contact with the aCTD is responsible for increasing the RNA
polymerase binding, whereas the interaction with the aNTD stimulates the isomerization step.
This shows how the same regulatory protein can activate transcription initiation at two different
biochemical steps by making entirely different contacts with RNA polymerase. Nevertheless, the
dual roles of cAMP*CRP enable the gal operon to be expressed primarily from P1 in cAMP-
proficient cells and from P2 in cAMP-deficient (eg, glucose grown) cells.
Figure 5. Activation of P1 by cAMPCRP by two different contacts with RNA polymerase.
The two domains aNTD and aCTD of the RNA polymerase a subunit are shown shaded.
Details are discussed in the text.
9. Summary
The study of the gal operon in E. coli has shown new ways and means of gene regulation at
the level of transcription initiation: (i) how proteins bound to spatially separated sites on DNA
communicate by DNA looping; (ii) how specific and nonspecific DNA binding proteins cooperate
to "condense" DNA, making the latter unavailable for transcription, while remaining sensitive to
an inducing signal; (iii) how the same regulator brings about opposite effects on promoters
activation and repressionby making direct contact with RNA polymerase; and (iv) how an
inducer allosterically changes a repressor to neutralize the inhibitory effect of repressor still
bound to DNA. Besides studying the detailed biochemical mechanisms of such controls, the two
interesting questions remain: What are the physiological reasons for the multitude of controls,
and how are these diverse controls coordinated in the cell?