Documente Academic
Documente Profesional
Documente Cultură
DOI 10.1007/s10529-014-1595-1
Received: 19 May 2014 / Accepted: 19 June 2014 / Published online: 22 July 2014
Ó Springer Science+Business Media Dordrecht 2014
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2230 Biotechnol Lett (2014) 36:2229–2237
Xylano-pectinolytic enzymes were produced under The ultrafiltered extract was subjected to (NH4)2SO4
submerged fermentation in 50 ml basal medium (g/l: precipitation to different cut-offs (0–25, 25–50, 0–50,
peptone, 5; MgSO47H2O, 2.46; pH 7) supplemented 25–70, 50–70 % saturation). The protein precipitates
with 2 % (w/v) wheat bran and 2 % (w/v) citrus peel. obtained after different cut offs were dissolved in a
The flasks were inoculated with 2 % (v/v) inoculum minimum volume of 10 mM glycine/NaOH buffer
(21 h old, OD * 0.85) and incubated at 37 °C for (pH 8.5). The precipitate sample and supernatant were
60 h at 200 rpm. Crude xylano-pectinolytic enzymes analyzed for xylanase and polygalacturonase activity
were harvested by centrifugation. at each fractionation step. The ammonium sulphate
concentrated xylanase and polygalacturonase samples
Enzyme assay and protein estimation were ultrafiltered using 1 kDa NMWC membrane
followed by discontinuous diafiltration for removing
The enzyme activities were determined using the the salt and then loaded onto gel filtration column.
method of Miller (1959). Birchwood xylan, 2 % (w/v)
(prepared in 0.1 M glycine/NaOH buffer, pH 8.5) and Gel filtration chromatography and molecular weight
polygalacturonic acid, 0.5 % (w/v) (prepared in 0.1 M determination
glycine/NaOH buffer, pH 9.0) were used as substrates
for assaying the activity of xylanase and polygalactu- A Sephadex G-100 column (95 9 0.8 cm) was pre-
ronase, respectively, as described by Kaur et al. equilibrated with 10 mM glycine/NaOH buffer, pH
(2011). Protein was estimated by the Bradford method 8.5. The partially purified xylanase and polygalactu-
using bovine serum albumin as standard. The protein ronase obtained after ammonium sulfate fractionation
content of the chromatographic fractions was also were loaded separately onto this column, which was
measured by monitoring the absorbance at 280 nm. run at 15 ml/h. Fractions 1 ml were collected and
analyzed for protein at 280 nm as well as xylanase or
Purification of xylanase and polygalacturonase polygalacturonase activity. Active fractions were
pooled and concentrated using ultrafiltration (1 kDa
The crude enzymes were purified using fast flow and NMWC) membrane and stored at 4 °C till further use.
conventional purification techniques. All steps of A mixture of gel filtration protein molecular weight
purification were carried out at 4 °C. markers containing (1) cytochrome c (12.4 kDa) (2)
carbonic anhydrase (29 kDa) (3) albumin (66 kDa) (4)
Microfiltration and ultrafiltration of crude extract alcohol dehydrogenase (150 kDa) and (5) b amylase
(200 kDa) was loaded on the Sephadex G-100 column
Clarification of the crude turbid extract was done by a under the above identical conditions and their elution
microfiltration unit (GE Healthcare Biosciences Ltd). volumes were determined. A standard graph was then
The extract obtained after microfiltration was ultrafil- plotted between Ve/Vo on the x-axis and log molec-
tered using 100 kDa nominal molecular weight cutoff ular weight on the y-axis for the calculation of the
(NMWC) membrane. Discontinuous diafiltration was molecular weight of the purified xylanase and
done three times by adding an equal volume of polygalacturonase.
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Biotechnol Lett (2014) 36:2229–2237 2231
For zymogram analysis, complete purified xylanase The effect of pH on enzymes activity was determined
(run on 12 % native PAGE gel) lane was overlayered by performing assays at different pH values (4–11)
onto 1 % (w/v) agar gel containing 0.1 % (w/v) xylan using the following buffers (100 mM); citrate buffer
and incubated for 20 min at 37 °C. Another purified pH 4–6, phosphate buffer pH 6–8, Tris/HCl buffer pH
xylanase lane of native PAGE gel was cut (corre- 8–9, glycine/NaOH buffer pH 8.5–11 and the stability
sponding to the bands of silver stained purified of enzymes over wide range of pH was investigated by
xylanase lane) into short gel pieces and all gel pieces mixing equal aliquots of purified enzyme and different
were overlayered far away from each other onto 1 % buffers (pH 4–11) followed by incubation at 37 °C.
(w/v) agar gel containing 0.1 % (w/v) xylan, and The effect of temperature on xylanase and polygalac-
incubated for 40 min at 37 °C to detect all the turonase activities was investigated by performing
isozymic forms of xylanase. After incubation, sub- enzymes assay at different temperatures (45, 50, 55,
strate-agar gels were stained with 0.5 % (w/v) Congo 60, 65, and 70 °C) and the temperature stability profile
Red for 15 min, destained with 1 M NaCl, and the was studied after pre-incubating these enzymes at
zymogram was observed for clear halos. To confirm different temperatures (4–55 °C) for variable time
the presence of isozymic forms of xylanase, the intervals. The effect of various metal ions and other
purified xylanase was run on native 12 % PAGE and additives (see Table 2 below) on xylanase and poly-
then the complete purified xylanase lane (cut from rest galacturonase activity was also studied. The Linewe-
of the gel) was rotated and placed at an angle of 908 on aver–Burk plot of the enzyme activity against
another native PAGE gel and again run to get the substrate concentration was plotted to determine the
bands separated in two dimensions. This gel was over- Km and Vmax values. The enzyme activity was
layered onto 1 % (w/v) agar gel containing 0.1 % (w/ estimated after incubating the optimally diluted
v) xylan, and incubated for 2 h at 37 °C. The halos enzyme sample at 55 °C with different concentrations
were observed after treating the gel with congo red. of birchwood xylan (2.5–15 mg/ml) and polygalactu-
The presence of isozymic forms of xylanase was ronic acid (0.3–5 mg/ml) as substrates for xylanase
reconfirmed in another way, the purified xylanase was and polygalacturonase, respectively.
run on native PAGE (12 %) and then the purified
xylanase lane of the polyacrylamide gel was cut
(corresponding to the bands of silver stained purified Results and discussion
xylanase lane) into short gel pieces. All gel pieces
were individually placed in separate wells one after the Enzymes purification
other in the same dimension on another native PAGE
gel and again run to get the well separated bands. This After passing the crude enzyme from microfiltration
gel was overlayered onto 1 % (w/v) agar gel contain- unit, the membrane based process of ultrafiltration,
ing 0.1 % (w/v) xylan, and incubated for 2 h at 37 °C. using 100 and 3 kDa NMWC membrane followed by
The isozymic forms were observed by the same congo discontinuous diafiltration, was used for the purifica-
red method. tion of xylano-pectinolytic enzymes. The ultrafiltration
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Table 1 Summary of the purification of xylanase and polygalacturonase from Bacillus pumilus AJK
Purification steps Enzyme Total activity Total protein Specific activity Yield Fold
(IU) (mg) (IU/mg) (%) purification
removed the high and low molecular weight proteins 2008). Gomes et al. (2009) have reported the purifi-
producing the partially purified xylano-pectinolytic cation of an exopolygalacturonase from Penicillium
retentate. Saturation of ultrafiltered enzyme extract viridicatum RFC3 by ultrafiltration, Sephadex G-75
with ammonium sulfate to 0–50 and 50–70 % cut offs gel filtration chromatography and Q Sepharose anion
precipitated xylanase and polygalacturonase, respec- exchanger with 37.7 fold purification and 3.4 %
tively. These precipitates were dissolved individually recovery.
in glycine/NaOH buffer (0.01 M, pH 8.5) and desalted
by 1 kDa NMWC membrane. Partially-purified xy- Molecular weight determination
lanase and polygalacturonase were loaded separately
in Sephadex G-100 column. Xylanase was eluted as Molecular weight of xylanase and polygalacturonase
two peaks from the Sephadex G-100 column, indicat- was determined by gel filtration chromatography using
ing the presence of at least two isozymic forms of standard gel filtration markers. Xylanase I and xylan-
xylanase. Fractions containing xylanase activity were ase II (two peaks of xylanase eluted from Sephadex
pooled and concentrated using a 1 kDa NMWC G-100 column) have a molecular weight of *24.5 and
ultrafiltration membrane. The elution profile of poly- *13 kDa, respectively, while the molecular weight of
galacturonase showed one peak. The polygalacturo- polygalacturonase was *40 kDa, as calculated from
nase fractions were also pooled and concentrated using the standard graph. Many xylanases (Kiddinamoorthy
ultrafiltration (1 kDa NMWC membrane). The purifi- et al. 2008) and pectinases (Kumar et al. 2012; Li et al.
cation fold, recovery and specific activity obtained 2008) produced by the Bacillus genus have molecular
after each purification step are given in Table 1. weights in the range of 20–45 kDa.
Xylanase was purified 19-fold with a 67 % recovery,
while polygalacturonase showed a 75 % recovery with Testing of enzymes purity and zymography
23-fold purification.
Xylanase by Bacillus sp. GRE7 was purified up to Native PAGE (10 %) of xylanase obtained after
28.5-fold with 27 % recovery using ammonium sul- different purification steps is shown in Fig. 1a.
phate precipitation followed by anion exchange and Initially, the two peaks of xylanase eluted from
gel filtration chromatography (Kiddinamoorthy et al. Sephadex G-100 were concentrated and run
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Fig. 1 Native PAGE of a xylanase:- Lane C Crude xylanase; pooled, concentrated and run as purified xylanase on long
Lane U Ultrafiltered xylanase; Lane A Ammonium sulfate electrophoretic gel apparatus to avoid merging of bands)
concentrated xylanase; Lane F1 Fractions from Sephadex G-100 showing seven bands of xylanase:- Lane A low sample loading
covering peak I of xylanase were pooled, concentrated and run and Lane B heavy sample loading, and c purified polygalactu-
and Lane F2 Fractions from Sephadex G-100 covering peak II of ronase:- Lane C Crude polygalacturonase; Lane U Ultrafiltered
xylanase were pooled, concentrated and run, b purified xylanase polygalacturonase; Lane A Ammonium sulfate concentrated
(all active xylanase fractions covering peak I and peak II were polygalacturonase and Lane P Purified polygalacturonase
separately. The fractions covering peak I of purified long continuous activity band (Fig. 2a), while the
xylanase gave some merged bands of xylanase, while zymogram of short gel pieces from the purified
the fractions covering peak II of xylanase showed two xylanase lane (cut with respect to the bands observed
bands on the native PAGE. Finally, all the fractions of in stained purified xylanase lane) showed the presence
Sephadex G-100 column containing active xylanase of seven prominent activity bands (Fig. 2b). Thirdly,
(covering peak I and peak II) were pooled, concen- by using complete native PAGE gel, in which the
trated and run as purified xylanase on (12 %) native purified xylanase bands separated in one dimension
PAGE in a long electrophoresis gel apparatus to avoid were again separated in second dimension (Fig. 2c),
merging of bands. The gel after staining with silver its zymogram gave seven prominent activity bands
nitrate showed the presence of seven bands of (Fig. 2d) and fourthly, by using complete native
xylanase (Fig. 1b). The purified polygalacturonase PAGE gel, in which the purified xylanase bands were
eluted from Sephadex G-100 column showed a single again separated in same dimension (Fig. 2e). Its
band on (10 %) native PAGE gel (Fig. 1c). zymogram also gave seven prominent activity bands
The seven bands of xylanase were confirmed as (Fig. 2f). Thus, confirming the presence of seven
isozymic forms of xylanase by zymography. Zymog- isozymic forms of xylanase. Separation of xylanase
raphy was performed in four different ways. Firstly, bands in two dimensions and then performing its
by using complete purified xylanase lane and sec- zymography facilitated a more complete examination
ondly, by using purified xylanase lane gel pieces. The and confirmation of xylanase multiplicity. Graciliba-
zymogram of complete purified xylanase lane gave a cillus sp. TSCPVG secreted multiple xylanases in the
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Fig. 2 Zymogram of xylanase obtained by using a complete lane of native PAGE gel and, d its zymogram, e separation of
purified xylanase lane of native PAGE gel, b short gel pieces of purified xylanase bands by using the short gel pieces of purified
the purified xylanase lane (cut with respect to the bands obtained xylanase lane (cut with respect to the bands obtained on similar
on similar stained gel), c Two-dimensional separation of stained gel), and f its zymogram, g zymogram of polygalactu-
purified xylanase bands by using the complete purified xylanase ronase on polygalacturonic acid
extracellular medium and its zymogram analysis on 2010). A zymogram of polygalacturonase showed a
native PAGE gel showed ten multiple bands associ- single prominent activity band at position correspond-
ated with xylanase activity (Giridhar and Chandra ing to that of the band in native PAGE (Fig. 2g).
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Biotechnol Lett (2014) 36:2229–2237 2235
Thus, confirmed the presence of a single form of Table 2 Effect of metal ions and other additives on purified
polygalacturonase. xylanase and polygalacturonase produced by Bacillus pumilus
AJK
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Almost all the metal ions, except Ca2? and Cu2?, The present characterization study indicates that these
increased the polygalacturonase activity. Similarly, xylanase and pectinase preparations have great
the majority of the additives such as EDTA, b- potential to be used for various industrial applications
mercaptoethanol, Triton X-100, Tween 20 and Tween at very low cost.
80 increased polygalacturonase activity, whereas urea
decreased activity. In case of both xylanase and Acknowledgments The authors acknowledge the financial
support provided by University Grant Commission, India.
polygalacturonase, SDS was the most potent inhibitor
University Research Scholarship awarded to Amanjot Kaur by
causing almost 75 and 66 % inhibition of activity, Kurukshetra University is also kindly acknowledged.
respectively. The xylanase produced by Bacillus sp.
GRE7 was also inhibited with Cu2? and Fe2? but, Conflict of interest The authors declare that they have no
conflict of interest.
contrary to our data, showed an enhanced activity in
the presence of Mn2? and Co2? (Kiddinamoorthy
et al. 2008). The activities of three endopolygalactu-
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