CLUSTAL 2.

1 Multiple Sequence Alignments

Sequence type explicitly set to Protein

Sequence format is Pearson
Sequence 1: sp|P80079|PRVA_FELCA 110 aa
Sequence 2: sp|P43305|PRVU_CHICK 109 aa
Sequence 3: sp|P02626|PRVA_AMPME 109 aa
Sequence 4: sp|P20472|PRVA_HUMAN 110 aa
Sequence 5: sp|P02627|PRVA_PELES 109 aa
Sequence 6: sp|Q91482|PRVB1_SALSA 109 aa
Sequence 7: sp|P02619|PRVB_ESOLU 107 aa
Sequence 8: sp|P02622|PRVB_GADMC 113 aa
Start of Pairwise alignments
Aligning...

Sequences (1:2) Aligned. Score: 51.3761

Sequences (1:3) Aligned. Score: 61.4679
Sequences (1:4) Aligned. Score: 87.2727
Sequences (1:5) Aligned. Score: 64.2202
Sequences (1:6) Aligned. Score: 48.6239
Sequences (1:7) Aligned. Score: 51.4019
Sequences (1:8) Aligned. Score: 49.0909
Sequences (2:3) Aligned. Score: 42.2018
Sequences (2:4) Aligned. Score: 52.2936
Sequences (2:5) Aligned. Score: 44.9541
Sequences (2:6) Aligned. Score: 47.7064
Sequences (2:7) Aligned. Score: 51.4019
Sequences (2:8) Aligned. Score: 46.789
Sequences (3:4) Aligned. Score: 62.3853
Sequences (3:5) Aligned. Score: 60.5505
Sequences (3:6) Aligned. Score: 49.5413
Sequences (3:7) Aligned. Score: 46.729
Sequences (3:8) Aligned. Score: 44.0367
Sequences (4:5) Aligned. Score: 67.8899
Sequences (4:6) Aligned. Score: 50.4587
Sequences (4:7) Aligned. Score: 56.0748
Sequences (4:8) Aligned. Score: 49.0909
Sequences (5:6) Aligned. Score: 48.6239
Sequences (5:7) Aligned. Score: 50.4673
Sequences (5:8) Aligned. Score: 43.1193
Sequences (6:7) Aligned. Score: 67.2897
Sequences (6:8) Aligned. Score: 52.2936
Sequences (7:8) Aligned. Score: 57.9439
Guide tree file created: [clustalw.dnd]

There are 7 groups

Start of Multiple Alignment

Aligning...
Group 1: Sequences: 2 Score:1674
Group 2: Sequences: 2 Score:1540
Group 3: Sequences: 4 Score:1536
Group 4: Sequences: 2 Score:1570
Group 5: Sequences: 3 Score:884
Group 6: Sequences: 4 Score:844
Group 7: Sequences: 8 Score:784
Alignment Score 9259
firstres = 1 lastres = 114
FASTA file created!

Fasta-Alignment file created [clustalw.fasta]

clustalw.fasta
>sp|P80079|PRVA_FELCA
MSMTDLLGAEDIKKAVEAFTAVDSFDYKKFFQMVGLKKKSPDDIKKVFHI
LDKDKSGFIEEDELGFILKGFYPDARDLSVKETKMLMAAGDKDGDGKIDV
DEFFSLVAKS----
>sp|P20472|PRVA_HUMAN
MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKSADDVKKVFHM
LDKDKSGFIEEDELGFILKGFSPDARDLSAKETKMLMAAGDKDGDGKIGV
DEFSTLVAES----
>sp|P02626|PRVA_AMPME
-SMTDVIPEADINKAIHAFKAGEAFDFKKFVHLLGLNKRSPADVTKAFHI
LDKDRSGYIEEEELQLILKGFSKEGRELTDKETKDLLIKGDKDGDGKIGV
DEFTSLVAES----
>sp|P02627|PRVA_PELES
-PMTDLLAAGDISKAVSAFAAPESFNHKKFFELCGLKSKSKEIMQKVFHV
LDQDQSGFIEKEELCLILKGFTPEGRSLSDKETTALLAAGDKDGDGKIGV
DEFVTLVSES----
>sp|Q91482|PRVB1_SALSA
MACAHLCKEADIKTALEACKAADTFSFKTFFHTIGFASKSADDVKKAFKV
IDQDASGFIEVEELKLFLQNFCPKARELTDAETKAFLKAGDADGDGMIGI
DEFAVLVKQ-----
>sp|P02619|PRVB_ESOLU
--SFAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYV
IDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGV
DEFAAMIKA-----
>sp|P02622|PRVB_GADMC
-AFKGILSNADIKAAEAACFKEGSFDEDGFYAKVGLDAFSADELKKLFKI
ADEDKEGFIEEDELKLFLIAFAADLRALTDAETKAFLKAGDSDGDGKIGV
DEFGALVDKWGAKG
>sp|P43305|PRVU_CHICK
MSLTDILSPSDIAAALRDCQAPDSFSPKKFFQISGMSKKSSSQLKEIFRI
LDNDQSGFIEEDELKYFLQRFECGARVLTASETKTFLAAADHDGDGKIGA
EEFQEMVQS-----

clustalw.dnd

(
(
(
sp|P80079|PRVA_FELCA:0.07365,
sp|P20472|PRVA_HUMAN:0.05363)
:0.08538,
(
sp|P43305|PRVU_CHICK:0.26546,
(
(
sp|Q91482|PRVB1_SALSA:0.17613,
sp|P02619|PRVB_ESOLU:0.15098)
:0.04106,
sp|P02622|PRVB_GADMC:0.24420)
:0.02841)
:0.08084)
:0.01383,
sp|P02626|PRVA_AMPME:0.21132,
sp|P02627|PRVA_PELES:0.18318);

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