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Submitted by
Sabahat batool
DEPARTMENT OF BIOTECHNOLOGY
FACULTY OF LIFE SCIENCES
Supervisory Committee
We the Supervisory Committee, certify that the contents and the form of thesis submitted by
Sabahat batool have been found satisfactory and recommend it for the evaluation of the Thesis
Evaluation Committee for the award of degree of M.Sc. Biotechnology.
Supervisor ______________________________
Dr/Mr/Ms
Assistant Professor/Lecturer
Faculty of Life Sciences, UCP
Co-Supervisor ______________________________
Dr/Mr/Ms
Assistant Professor/Lecturer
Faculty of Life Sciences, UCP
University of Central Punjab
FACULTY OF LIFE SCIENCE
Examination Committee
The thesis viva of Sehar Sikander (L1F15MCBT0019) was held on 18-10-17 at Faculty of Life
Sciences, University of Central Punjab. The Supervisory and Thesis Evaluation Committee gave
satisfactory remarks on the thesis and viva and were approved for the award of the degree of
M.Sc. Biotechnology.
__________________________ _______________________
Undertaking
I also undertake that I will be responsible for any plagiarism in this thesis.
___________________
Sehar Sikander
University of Central Punjab
FACULTY OF LIFE SCIENCE
Plagiarism Report
This is to certify that I have examined the Turnitin report of the thesis entitled “Mitochondrial
genome analysis of ectopistes”. The overall similarity index obtained from the Turnitin software
is 15%.
____________________
STUDENT NAME
Dedication
“Dedication, Determination and Hard work will feed life into your dreams.”
LaDonna M. Cook
First of all, I thank ALLAH for His countless blessings and to reunite and renovated through
these ages that have approved me to grow to this stage of learning awareness and principles.
I dedicate my thesis to my parents, siblings, supervisor, research fellows, and friends for
supporting me with love and helpfulness
ABSTRACT
approximately 90% electricity for the organism and plays some of essential roles in cell
homogenously scattered in the course of the cytoplasm, while the distribution in a few
stem cells and mature oocytes is perinuclear. These findings suggested that the spatial
additionally indicate the pluripotency of stem cells. but mitochondrial distribution has not
been tested in embryonic stem cells to date. My thesis investigates the distribution of
determine and evaluate the spatial distribution of mitochondria in embryonic stem cells
association.
ACKNOWLEDGMENTS
First of all, I am very thankful to my Lord, ALLAH ALMIGHTY for his limitless blessings He
bestowed on me that made me able to do this work. It is a great blessing that MUHAMMAD
(S.A.W.) is my Prophet and all praises are for Him who made education compulsory for every
men and woman.
I am greatly thankful to my beloved parents whose prayers and efforts helped me a lot and
motivated me during this period.
I would like to express my deepest feelings to my Dean, Prof. Dr Mushtaq A. Saleem and my
research supervisor Dr. Javed Iqbal Wattoo, Faculty of Life Sciences at the University Of
Central Punjab. His intellectual supervision, kind and generous guidance and special attention to
my work had contributed greatly in completing research.
I would also like to thank the experts who were involved in the validation survey for this
research project: Haleema Mehmood and Iqra Rabeel. Without their passionate participation
and input, the validation survey could not be successfully conducted.
I take this opportunity to record our sincere thanks to all the faculty members of Faculty of Life
Sciences for their help and encouragement.
I would like to present my sincere thanks to my parents, siblings, and to my research fellows and
to my close friends for always encouraging and inspiring me. I am very thankful to them.
TABLE OF CONTENTS
vi
A. Spermatogenesis .................................................................................... 7
B. Oogenesis ............................................................................................... 8
C. Fertilization .............................................................................................. 9
D. Preimplantation Development ............................................................... 12
E. Implantation........................................................................................... 15
vii
V. MITOCHONDRIAL DISTRIBUTION IN EMBRYONIC
STEM CELLS ............................................................................47
A. Embryonic Stem Cells ........................................................................... 48
B. Bavister’s Hypothesis ............................................................................ 49
C. Possible Reasons for Perinuclear Mitochondria in Stem Cells ............. 51
D. Hypothetical Experiments Designed to Test Bavister’s Hypothesis ...... 53
i. Research Objectives .......................................................................... 53
ii. Materials ............................................................................................ 53
iii. Research Method ............................................................................. 54
iv. Expected Results .............................................................................. 56
VI. CONCLUSIONS AND FUTURE DIRECTIONS ..........................60
A. Conclusions........................................................................................... 61
B. Future Directions ................................................................................... 62
37
45
mammalian oocytes 46
59
ix
LIST OF ABBREVIATIONS
ATP: adenosine-5'-triphosphate
DAPI: 4',6-diamidino-2-phenylindole
GSH: glutathione
x
Met I: metaphase I
MFs: microfilaments
MTs: microtubules
xi
CHAPTER I
INTRODUCTION
A. Focus of Thesis
Mitochondria are known as “the strength house of the cellular,” due to the fact
As “the energy house for cells,” mitochondria play important roles at some
(Smith et al., 2005; Katayama et al., 2006; Dumollard et al., 2009; Van
Katayama et al., 2006; Wang et al., 2009). those facts result in the
questions: Is the spatial distribution of mitochondria essential for
distribution.
B. Significance
Embryonic stem cells (ES cells) are specific cellular populations with the
al., 2001). they have got the ability to be used to treat a ramification of
allow us a higher know-how in stem cell biology, and can offer novel
cells.
CHAPTER II
DEVELOPMENT
element under.
A. Spermatogenesis
In mammals, sperm broaden within seminiferous tubules within the testes and
flagellum that has grown from the centriole pair inside the neck, a mid-
piece containing mitochondria that shape a ring across the base of the
within the mid-piece of the sperm offer ATP needed to whip the
combination and fuse into massive organelles that wrap around each
for the duration of Nebenkern formation and the mutant lies are sterile.
B. Oogenesis
In mammals, oocytes broaden inside follicles inside the ovary (Fig. 1; Eppig
and O’Brien, 1996). primary oocytes are fashioned earlier than start in
occurs all through first meiosis (Meiosis I). The primary oocyte divides
right into a haploid secondary oocyte and a haploid first polar body,
ovulation, the secondary oocyte is launched from the ovary and enters
determinant for oocyte excellent (Wang et al., 2009). the primary and
cells and follicular cells, and meiosis of oocytes require ATP. besides
C. Fertilization
(Gilbert, 2006). while the oocytes are mature, they will be ovulated
from the ovary and input the oviduct (Fig. 1). The sperm also travel
from the vagina to the oviduct to fulfill the oocytes. at some point of this
capability to fertilize the egg. The important riding force for the ride of
sperm from the vagina to the oviduct is the muscular hobby of the
crucial for sperm motility. latest studies observed that mtDNA mutation
can lead to impaired spermatogenesis and impaired sperm motility
Fertilization takes place in the upper third of the oviduct (Fig. 1). The fertilized
offevolved from the contact of sperm and egg. Sperm have a cap-like
structure at their anterior part of their head called the acrosome. once
zona pellucida in order that the sperm can penetrate the zona
pellucida. After that, a part of the sperm’s plasma membrane (at the
equatorial phase) fuses with the oocyte’s plasma membrane, and the
contents of the sperm which include the sperm nucleus and sperm
straight away (Gilbert, 2006). with the aid of 15 hours after fertilization,
disappear and the chromosomes from the sperm and oocyte intermix
D. Preimplantation Development
genome, and the start of cell differentiation (Kanka, 2003). This level
initialized inside the zygote (Gilbert, 2006). The zygote undergoes first
mitosis and divides right into a 2-cellular degree, four-cell stage, 8-cell
cleavage stages inside the oviduct (Fig. 1). because the zygote
divides, the cells come to be smaller. The early embryo does no longer
After compaction, the embryo emerges because the morula (Fig. 1).
are gift inside the blastocyst: inner cellular mass (future embryo) and
Nanog ends in differentiation of the two cell sorts inside the blastocyst
become the pluripotent embryonic epiblast and stopping the ICM cells
inside the compacted morula and turn out to be restrained to the ICM.
Homozygous Nanog mutant embryos deliver upward push to an ICM,
but they fail to keep pluritpotency inside the cells of the epiblast which
advise that Nanog cooperates with Oct4 and Sox2 at some point of
John, 2009).
(Gilbert, 2006). Cdx2 blocks Oct4 and Nanog expression inside the
happens at the two-cell level within the mouse and four-mobile level in
from the 1-mobile or 2-cell stage to 4-cell and 8-mobile embryos. The
development, which isn't always unexpected to look for the reason that
E. Implantation
the oviduct at the blastocyst degree (Fig. 1). After the blastocyst
gastrulation, the 3 embryonic germ layers are formed with the aid of
increase inside follicles in the ovary. when the oocytes are mature,
they may be ovulated from the ovary and input the oviduct. at some
II (Met II) till fertilization. Fertilization occurs within the higher 1/3 of the
development. The zygote undergoes first mitosis and divides right into
embryo that's known as morula. the next stage is the blastula which in
(destiny placenta).
CHAPTER III
A. Structure
with cell in liver cells (Alberts et al., 1994). some cells inclusive of sea
al., 1994). The outer membrane contains porin proteins which form
be 5 kDa or less (Ha et al., 1993). The inner membrane has a high
porins (Alberts et al., 1994; Cooper and Hausman, 2006). The inner
It has a similar ionic attention to the cytosol (Alberts et al., 1994). the
gap enclosed by the internal membrane is called the matrix. The matrix
al., 1994).
they include their personal DNA (Cooper and Hausman, 2006). The
the nuclear genome and their own genome (Benard and Karbowski,
organelles.
The mtDNA has several characteristics. First, it is circular like bacteria, which
genetic code (Cooper and Hausman, 2006). for example, AGA and
stop condon, but encodes for tryptophan in mitochondria. 1/3, there are
genome length, the coding feature of the mtDNA has remained rather
which is 367 kb and encodes for fifty seven proteins (Unseld et al.,
tremendously small and has sixteen,569 bp. It has 37 genes and not
mtDNA additionally encodes for two rRNA (16S and 12S rRNA) and 22
2007).
B. Origin
been not able to metabolically use oxygen. sooner or later, they had
as an evolutionary benefit.
1999). First, mtDNA is circular which isn't like nuclear DNA and is just
like DNA of micro organism. except that, the mitochondrion is set the
and delivery structures just like the ones of prokaryotes. The ultimate
C. Biogenesis
Binary fission is the procedure via which mitochondria reproduce (Benard and
Karbowski, 2009). Their duplicate is not always timed with the cell
D. Inheritance
E. Biochemistry
of ATP for cellular activities (Fig. 4). They do this by the process of
by organisms in their diet are broken down and converted into ATP
(Cooper and Hausman, 2006). About 90% of the energy the organism
Brown, 1984).
the organism are used for energy production. The carbohydrates first
split into pyruvate in the cytosol through glycolysis (Fig. 4). Then the
pyruvates are transported into the mitochondrial matrix where they are
oxidized into acetyl-CoA and enter the citric acid cycle (also known as
into the matrix where they are oxidized to Acetyl-CoA and enter the
TCA cycle.
The enzymes for the citric acid cycle in the matrix oxidize the acetyl-CoA to
matrix. The energy stored in the proton gradient then drives the
synthesis of ATP when the protons flow back to the matrix through
Hausman, 2006).
F. Mitochondrial Polarity
Mitochondrial polarity ( Ψm) refers to the ability distinction across the inner
functions, which include law of ionic fluxes and ATP liberation, and
Wang et al., 2009). it's also the using force for different activities,
(Huang et al, 2002; Van Blerkom et al., 2006). Mitochondria that look
include JC-1 (Van Blerkom et al., 2002, 2009). The mitochondria with
high
Ψm are often pericortical (Van Blerkom et al., 2002). therefore, despite the fact
take part in calcium garage and the shipping of Ca2+ (Berridge et al.,
activated T cells (NFAT) pathway whose target genes are essential for
come across DNA harm, they set off Bax proteins, which cause the
can be found in various frame regions and the disorder varies from
et al., 1998) and diabetes (Suzuki et al., 1997; Liou et al., 2003). The
phenotypes, and the same phenotype can end result from numerous
one of a kind mutations. similarly, the distribution of mtDNA mutations
meals might collect in the cell as poison to damage the frame even
further. for instance, free radicals along with reactive oxygen species
2006; Dumollard et al., 2009). The most important region for ROS era
patients which can be even worse. except inflicting aging and most
fusion and fission that are opposing forces are critical for cellular
diseases can not be cured and the treatment for those sicknesses
useful for a few patients like Coenzyme Q10, diet B circle of relatives,
nutrition C, biotin, vitamin E and different antioxidants (Przyrembel,
and have showed promise. but, they may be nonetheless far from
clinical utility.
improvement due to the fact they provide ATP for the techniques from
ATP for the procedures of mitosis and meiosis inside the events of
and mitotic spindle actions. Mitochondria seem like required for oocyte
and thus far has no longer been hooked up so that there may be a
oocytes, and oocytes from women of superior maternal age. this could
Blerkom et al., 2008). it has been advised that NO from cumulus cells
Every other instance that mitochondria play a primary function all through
equivalents (or electron donors, along with NADH) that are utilized in
retardation.
The features of mitochondria decline as the organism a long time. it's been
36
Figure 4. The Schematic diagram of the bioenergetic path ways in the
mitochondria.
CHAPTER IV
MITOCHONDRIAL DISTRIBUTION
(MTs). MFs, that are also referred to as actin filaments, are made by
1999).
Actin and tubulin polymerization have been notably studied in vitro. There are
B and cytochalasin D disrupt MFs with the aid of binding to the barbed
capsules have been used to benefit insight into the capabilities of the
cytoskeleton.
tracks and motor proteins for their moves (Frederick and Shaw, 2007).
proven to rely upon MTs in neurons and pig embryos (solar et al.,
are vital for normal mitochondrial function (Boldogh and Pon, 2007).
form a meshwork filling the complete cell. further, this localization relies
Preimplantation Development
fertilization event.
Even primary oocytes have a different mitochondrial distribution than mature
canine oocytes found that the primary oocyte in the GV stage has a
Similar to pig and canine oocytes, evidence of stage- and cell cycle-specific
minutes and thawed (Nagai et al., 2006). This treated oocytes showed
mitochondria into the oocyte (Nagai et al., 2004). In the same manner,
Blerkom, 2009).
44
Figure 5. Diagram displaying vicinity of mitochondria in a typical somatic
Mouse IgG2b labeling package and the mitochondria (red) with anti-
(A21350) prelabeled with the Zenon® Alexa Fluor® 555 Mouse IgG2b
based on sun et al., 2001; Valentini et al., 2009; and Van Blerkom,
2009.
CHAPTER V
STEM CELLS
ES cells are cultures of cells derived from the inner cell mass of a blastocyst
or earliest morula degree embryos (Wright, 1999; Fig. 7). they've the
ES cells have their precise gene expression. the important thing pluripotent
factors are Oct4 and Sox2. Oct4 is the grasp regulator and needs to be
using Oct4 and P53, and at the identical time works collectively with
Oct4 and Sox2 to control the downstream gene law and hold
except their specific gene expression, the capability to form a teratoma, which
St. John, 2009). This exciting finding can be mentioned extra inside the
next section.
ES cells have medical significance for they may doubtlessly offer a limiteless
2001).
B. Bavister’s Hypothesis
Despite the fact that the spatial distribution of mitochondria with admire to the
due to the fact zygotes and cleavage degree embryos which includes
al., 2006). additionally they stated that due to the fact that handiest
stem cell lines Rhesus & human were examined, many more cell
traces will want to be investigated to look if the hypothesis holds. it's far
crucial with the intention to stumble on correct stem cells with self
account that they are derived from “leftovers” from IVF clinics, and
therapeutically.
Stem Cells
There are a number of capacity motives for the stem cells to have a
mobile line (ATSC) had been decrease whilst cells have been stem-
inside the monkey ATSC cell line upon differentiation. some other
et al., 2007).
Given that the principle functions of mitochondria are ATP synthesis and
also result from the high call for of ATP and calcium in the course of
is very probable to due to the excessive strength call for round nucleus
(Wang et al., 2009). consequently, it's far distinctly possible that the
The iPSCs generated via described elements from mouse or human fibroblast
gene expression such as Oct4, Sox2 and Nanog and had been
al., 2007). but, every other critical feature of pluripotency has no longer
above, there are motives to accept as true with that iPSCs indeed are
Bavister’s Hypothesis
Research Objectives
be used.
MLE-15 cells.
15 cells.
Materials
For undifferentiated cells, MES cells might be used. For differentiated cells,
MLE-15 (mouse lung epithelial) cells could be used. For iPSCs, mouse
Research Method
air.
to microscope slides (in a skinny glass backside sterile way of life dish)
7.2 ) and 0.3% bovine serum albumen (BSA). Tubulin will be detected
fluorescence microscope using the UV, FITC and Rhodamine filter out
microscope (Olympus the usa Inc., Melville, ny). The poor manage will
include omission of the number one antibody from the protocol, and
for six hr. After fixation as above, samples can be stained as follows.
Expected Results
to the cytoplasm and are absent from the nucleus. this is steady with
the MES cells do. this would show a role of the cytoskeleton in
56
Figure 7. Education of cultured embryonic stem (ES) cells. whilst inner mobile
mass cells are removed from the blastocyst and placed in subculture,
adult rhesus macaque stromal cells (ATSC) have been stained with 50
outer edge is outlined with a black line. The mobile nucleus is proven
staining. The crimson lines are the axes of the graph displaying the
precipitously toward the cellular periphery, indicating the ATSC cell has
al., 2006)
58
A
five ug/ml DAPI to visualise DNA (B) have been regarded at 60x with
A. Conclusions
possible in adults.
Mitochondrial distribution patterns in oocytes are stage- and mobile-cycle-
cytoskeleton.
cycle levels. latest studies discover that not only the mitochondrial
mobile types.
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