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1, January 2019
E-ISSN: 2321-9637
Available online at www.ijrat.org
phosphate in glycolysis pathway was calculated and compared with their corresponding standard Gibbs free
energy change of reaction ( r G ) . The results revealed that that there is significant difference in values of
0
( r G '0 ) and ( r G 0 ) . Thus, it is inferred that the thermodynamic property ( r G 0 ) is not sufficient to
provide a criterion for the spontaneity of biochemical reaction. Transformed Gibbs free energy change must be
minimized rather than standard Gibbs free energy change of reaction at the state of equilibrium in the case of
biochemical reactions at constant pH and pMg.
Keywords-Transformed and standard Gibbs free energy change of reaction; pH; pMg
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International Journal of Research in Advent Technology, Vol.7, No.1, January 2019
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2.91842 z i2 I 1 / 2
G 'f0,i G 0f ,i ( I 0)
1 BI 1 / 2
Standard Gibbs free energy of formation of metabolite species at specific ionic strength, I
Standard Gibbs free energy of formation of species at specified pH, pMg and ionic strength
Fig. 1 Steps followed for the calculation of G 'f0,i of metabolite species of biochemical reactants at specific pH,
pMg and ionic strength
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International Journal of Research in Advent Technology, Vol.7, No.1, January 2019
E-ISSN: 2321-9637
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3. RESULTS AND DISCUSSION acid such as H+ and Mg2+. The detailed stoichiometry
3.1. Construction of mass and charge balanced construction procedure is described below. The mass
reaction balance equation for each of the biochemical
reactants present in Eq. (1) are given below.
Each biochemical reactant dissociate at specific pH
and it results in the formation of complex with Lewis
[ F 6P] = [ F 6P 2 ] [ HF 6P1 ] [MgF 6P]
= [ F 6 P 2 ] K HF 6 P1 [ F 6 P 2 ][ H ] K MgF 6 P [ F 6 P 2 ][ Mg 2 ]
= [ F 6 P 2 ]{1 K HF 6 P1 [ H ] K MgF 6 P [ Mg 2 ]}
[ F 6 P] = BF 6 P [ F 6 P 2 ] (6)
[ATP ] = [ ATP 4 ] [ HATP 3 ] [ H 2 ATP 2 ] [MgATP 2 ] [MgHATP1 ] [Mg 2 ATP]
= [ ATP 4 ] K HATP3 [ ATP 4 ][ H ] K H ATP2 [ ATP 4 ][2 H ]
2
4 2
K MgATP2 [ ATP ][ Mg ] K MgHATP1 [ ATP 4 ][ Mg 2 ][ H ]
K Mg2 ATP [ ATP 4 ][2 Mg 2 ]
= [ ATP 4 ]{1 K HATP3 [ H ] K H 2 [2 H ] K MgATP2 [ Mg 2 ]
2 ATP
K MgHADP[ H ][Mg 2 ]}
[ADP] = BADP [ ADP 3 ] (9)
where, the binding polynomials of each of the biochemical reactant are given below.
B F 6P
= {1 K [H ] K
HF 6 P1
[ Mg 2 ]}
MgF 6 P
B ATP = {1 K HATP3 [ H ] K H 2 [2 H ] K MgATP2 [ Mg 2 ] K MgHATP1 [ H ][Mg 2 ]
2 ATP
The binding polynomials of each of the biochemical the biochemical reactions involving complex species.
reactant are dependent on pH, pMg and pKa. Gibbs The corresponding equilibrium constant was
free energy change of reaction was calculated for all calculated using Eq. (10).
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Table 4 f Gi''0 of free species and r Gi'0 complex species at T = 298.15 K, I = 0.28 M, pH=7, pMg=3 and P =
1 atm
Reactants Biochemical reactions of fG 0
i at
vi Concentrat r Gi0 at
free and complex species ion (M)
I=0.28M I=0.28M,
(KJ/mol) pH=7, pMg=3
(KJ/mol)
F6P2- NA -1764.15 0.842 0.842 -1484.53
HF6P1- F6P2-+ H+ HF6P1- -1797.41 0.0406 0.0406 -73.29
2- 2+
MgF6P F6P +Mg MgF6P -2238.28 0.118 0.118 -264.74
ATP4- NA -2784.48 0.1201 0.1201 -335.05
3- 4- + 3-
HATP ATP + H HATP -2821.99 0.0322 0.0322 -91.14
H2ATP2- ATP4-+ 2H+ H2ATP2- -2844.51 5.42 10 12 5.42 10 12 1.58 10 8
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International Journal of Research in Advent Technology, Vol.7, No.1, January 2019
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v F 6 P 2 v HF 6 P1 v MgF 6 P v F 6 P 1; Hence, 0.9624 [H+] ion and 0.978 [Mg2+] ion
concentrations were added to left and right terms
v ATP4 v HATP3 v H 2 v MgHATP1 v Mg2 ATP v ATP 1; respectively in order to balance the biochemical
2 ATP
Gibbs free energies change of reactions are given in (KJ/mol), temperature in K and ionic strength in M.
a
Standard Gibbs free energy change of reaction values at pH 7 and temperature 298.1 K as reported by Maskow and von Stockar (2005).
b
Free energy change values as reported by Goldberg et al., 2004 and is available in NIST database. The experimental pH, I and pMg are
provided in the subsequent columns.
c
Calculated standard Gibbs free energy change of reaction values without considering pH, ionic strength and metabolite complex with H+ and
Mg2+ ions at 298 K
d
Transformed Gibbs free energy change of reactions values with corrected pH 7 and ionic strength (0.28M) at 298K
e
Transformed Gibbs free energy change of reactions values with corrected pH 7, ionic strength (0.28M) and the inclusion of metabolite species
complex with H+ ions at 298K;
f
Transformed Gibbs free energy change of reaction values with corrected pH 7, pMg 3, ionic strength (0.28M) and the incorporation of
metabolite species complex with H+ and Mg2+ ions at 298 K.
r Gi'0 for the conversion of fructose 6 phosphate to results reported by Iotti, [8] in which r G is shown
'
fructose 1,6 bisphosphate in glycolysis is minimized to be equal to r G in ATP hydrolysis. From this
after incorporating the corrections of pH, pMg, ionic
study, it is inferred that pH, pMg, ionic strength and
strength and change in binding of H+ and Mg2+ ions.
change in the binding of hydrogen and magnesium
There is no significant difference between r Gi
'0
ions have an effect on r G . The conclusions
'
before and after including the corrections of change specified by Iotti, [8] cannot be generalized to all
in binding of Mg2+ ions. The results indicated that biochemical reactions.
r G ' showed 1.95 fold more than standard Gibbs
free energy change of reaction. Acknowledgement
The author TER would like to thank UGC for UGC-
BSR fellowship.
4. CONCLUSION
REFERENCES
r G ' was calculated by incorporating the effect of [1] G. P. Moss. "IUBMB-IUPAC Joint Commission
pH, pMg, ionic strength and change in the binding of on Biochemical Nomenclature (JCBN),
hydrogen and magnesium ions. There is a significant Recommendations for nomenclature and tables in
difference between r G and r G . These results biochemical thermodynamics", (1994). Available:
'
http://www.chem.qmul.ac.uk/iubmb/thermod/.
obtained from this study is inconsistent with the
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