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Pharm Bio Sc 1L
Laboratory Manual
2015 Edition
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To the student
Laboratory protocols
Course attendance is your responsibility and you are expected to attend every
laboratory class.
The laboratory gown and close-toed footwear are required to be worn at all
times while inside the laboratory.
Bags and other unnecessary things should not be found in the working area.
Have your own drawing and labeling materials.
Eating and drinking are not allowed inside the laboratory.
The activities should be read and understood before coming to class.
Do not perform any unauthorized experiments.
Excessive noise and unruly behavior is prohibited in the laboratory.
Utmost care should be observed for the proper use and handling of all
laboratory equipments.
All laboratory equipment should be used for their intended purpose.
Cleanliness of the laboratory is to be maintained at all times.
Proper disposal of materials and wastes is expected of everyone.
Arrive on time for class and maintain proper classroom decorum at all times.
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Laboratory Groupings
Groups of 4-5 students will be formed on the first day. Being a member,
participation and responsibility are encouraged. Work in the laboratory may be done
individually or by groups. In any way, honesty, resourcefulness and proper scientific
behavior are expected and enforced.
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NAME: ___________________________ INSTRUCTOR: _____________
EXERCISE NO. 1
The compound microscope is one of the most often used and useful tools in
this course. An understanding of the proper structure and use of the microscope is
essential. The more competent you are in using this instrument the more you will
be able to see the material you study.
I. OBJECTIVES: In this exercise, you should become familiar with the parts of the
compound microscope and their functions, and be able to use the microscope
correctly.
II. MATERIALS:
Compound microscope
Reference materials
III. PROCEDURE:
1. Set the microscope on a steady and flat surface and examine the adjustments
or the screws which raise or lower the body tube. The larger screw is the
coarse adjustment which brings the specimen being observed into focus
while the smaller one is the fine adjustment which is manipulated for precise
and fine image of the specimen. Immediately above the body tube is a
smaller tube called the draw tube, which holds the eyepiece/ ocular where
the observer looks into in order to view the specimen under study.
2. The arm connects the body tube to the base of the microscope.
3. Manipulate the revolving nosepiece; it enables the observer to shift from
one objective to another: the scanning objective (SO) is the shortest tube
with the least magnification capacity, low power objective (LPO) for
greater magnification, the high power objective (HPO), and the oil
immersion objective (OIO).
4. The dust shield is seen over the revolving nosepiece in order to protect the
objectives from the dust particles and other foreign bodies that might impede
the proper movement and functioning of the objectives.
5. Just below the objectives is a flat square surface known as the stage where
the slide to be examined is mounted, and secured with stage clips to hold it
in place. The aperture is the hole in the stage through which the base
(transmitted) light reaches the stage. Stage height adjustments (Stage
Control) are knobs used to move the stage left and right or up and down.
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6. Under the stage is a thin metallic disc known as the iris diaphragm. This
regulates the amount of light that enters the microscope. In some
microscopes, a short metallic cylinder is found between the stage and the
diaphragm, known as the condenser which focuses the light on the specimen.
7. The mirror, supported by the mirror rack attached to the base, catches and
reflects the light on the specimen. One side of the mirror is plane and the
other concave, in order to collect natural and artificial light, respectively.
*** Instead of mirror for capturing light, modern light microscopes are
equipped with illuminator, typically located in the base of the microscope.
Most light microscopes use low voltage, halogen bulbs with continuous
variable lighting control located within the base.
IV. ILLUSTRATION:
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V. QUESTIONS FOR RESEARCH:
a. Light
microscope
b. Scanning
microscope
c.
Transmission
electron
microscope
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d. Dark field
microscope
e. Phase-
contrast
microscope
f.
Interference
microscope
g. Confocal
Scanning
LASER
microscope
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2. Discuss the importance of the use of microscopes in the study of plants as a
whole.
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NAME: _________________________ INSTRUCTOR: _____________
EXERCISE NO. 2
MAGNIFICATION
The use of the microscope allows you to observe specimens that are too small
to be seen by the unaided eye. Adjusting the objective lenses permits you to
increase the size of the specimen being observed under the microscope.
I. OBJECTIVES: In this exercise, you should be adept in the art of focusing and
depth perception. You should be able to compute for the magnification of an object
seen under the microscope and compare magnified specimens to their original sizes.
II. MATERIALS:
Compound microscope
Hand lens
Ruler
Micrometer eyepiece
A small leaf
A tiny pebble
Prepared onion root tip
III. PROCEDURE:
A. Macroscopic measurement:
1. Measure the actual size of the pebble and the leaf using the millimeter
scale of the ruler. Consider the length and width.
2. Enlarge the size of the pebble by five (5) times
3. Reduce the size of the leaf by half (1/2)
B. Microscopic measurement:
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2. Place the prepared slide of onion root tip on the stage and focus under
LPO. Count the number of micrometer spaces that will cover the length
as well as the width of one cell. Allow every member to measure then
get the average sizes as well. Convert this average micrometer spaces
reading into its millimeter equivalent. This will give the actual size of the
specimen in millimeters.
IV. ILLUSTRATIONS:
1. Draw the pebble in its (a.) actual size (b.) magnified size
2. Draw the leaf in its (a.) actual size (b.) reduced size
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V. COMPUTATIONS:
2. Compute for the average size of one (1) onion root tip cell expressed in
millimeters.
1. Define:
a. Magnification
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b. Resolution
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2. Give 5 microorganisms and 5 macroorganisms, and indicate the average actual
sizes.
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Macroorganisms Picture Actual size
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NAME: ___________________________ INSTRUCTOR: _____________
EXERCISE NO. 3
EXERCISES IN FOCUSING
I. OBJECTIVES: In this exercise, you should be able to properly focus and obtain
a clear image of the specimen using a compound microscope, prepare and observe
a simple wet mount and compare the images seen using the different objective
lenses, namely the SO, LPO, HPO and OIO.
II. MATERIALS:
III. PROCEDURE:
IV. ILLUSTRATIONS:
Draw the (a.) onion root tip and (b.) onion membrane as observed under SO,
LPO, HPO, and OIO. Compare the observations of the onion root cells as to their
shape, size and abundance.
Prepared slide of
Shape Size Abundance
onion root tip
Scanning objective
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High power objective
Onion membrane
Shape Size Abundance
(Wet mount)
Scanning objective
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High power objective
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NAME: ___________________________ INSTRUCTOR: _____________
EXERCISE NO. 4
CELLULAR FUNCTIONS
The structures and organization of plant cells influence the different activities
that occur within the living cell. These biologic activities include diffusion and
osmosis. These processes allow substances to enter and pass through plant
structures.
I. OBJECTIVES: In this exercise, you should be able to define and observe the
processes of diffusion and osmosis. You should be able to explain how these
processes affect the movement of substances into and out of the plant cells.
II. MATERIALS:
For osmosis set-up For Osmosis
For diffusion set-up
(egg model) (Red onion)
Beetroot Beakers (1-L capacity, 250-ml Small red onion
capacity)
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III. PROCEDURE: (set up to be explained and demonstrated by the
instructor)
A. Diffusion
1. Cut 3 discs of beetroot with a size 4 cork borer (diameter). Thickness of the
discs should be 1cm.
2. Set up a series of water baths at different temperatures using the 400-ml
beakers.
a. Ice bath (0-4°C)
b. Water bath at room temperature
c. Warm bath (40-45°C)
3. Fill the small beakers with 50ml of distilled water. Label the beakers (one for
each temperature of water bath) with the temperature. Place the beakers, one
in each water bath, for 5 minutes to equilibrate to the water bath temperature.
4. Collect the beetroot discs using forceps. Blot them dry using tissue paper and
put each disc into the small beakers and leave in the water bath for 30
minutes.
5. After 30 minutes, shake the small beakers gently to make sure any pigment
is well-mixed into the water, and then remove the beetroot discs.
6. Describe the depth of colour in each beaker. A piece of white card behind the
beakers will make this easier to see. Arrange the beakers in order of
temperature of the water bath.
1. Place the eggs in the 1-L beaker and pour enough vinegar to cover the eggs
entirely. Soak the eggs for 48 hours or until the shell has completely dissolved.
2. Once the shells have been dissolved, carefully remove the eggs from the
vinegar and rinse with tap water.
3. Blot the eggs dry using tissue paper, weigh (grams) and measure the
circumference (cm) of each egg and record the initial circumference and
weights.
***For circumference, wrap a piece of string around the width of the egg until
both ends meet. Straighten the string and align against a ruler to record the
circumference.
4. Label and fill three 250-ml beakers with the following solutions:
Beaker A: 100ml of distilled water with 5 drops of blue food color
Beaker B: 100ml of 0.9% salt solution with 5 drops of green food color
Beaker C: 100ml of saturated sugar solution with 5 drops of red food
color
5. Soak one shell-less egg in each of the solutions for 24 hours.
6. After 24 hours, take pictures of your setup and observe changes in the
color and volume of the solutions. Remove the eggs from the solutions, blot
dry using tissue paper.
7. Measure the circumference and weigh each egg and record your results.
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8. Calculate the percent change in circumference and mass for each egg using
the following formula:
1. Carefully slice away the colored layer of cells from the red onion. This should
only be the thin purple layer.
2. Place the thin, purple onion layer on a dry microscope slide shinny side up.
3. Put a drop of 0.9% salt solution and mount the cover slip. Wait for 5 minutes
before focusing under the microscope.
4. Scan the entire slide using LPO. Take pictures.
5. Make another wet mount of the onion epidermis using distilled water. Wait for
5 minutes before focusing under the microscope.
6. Scan the entire slide using LPO. Take pictures.
7. Make another wet mount of the onion epidermis using 15% salt solution. Wait
for 5 minutes before focusing under the microscope.
8. Scan the entire slide using LPO. Take pictures.
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IV. ILLUSTRATIONS:
Provide pictures
Diffusion setup
Circumference
Egg in
distilled
water
Mass
Circumference
Egg in
0.9% salt
solution
Mass
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Circumference
Egg in
saturated
sugar
solution
Mass
Provide pictures, label the parts, and using arrows indicate the movement
of water into/out of the cell
Distilled water
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15% salt solution
A. Red blood cells (and other animal cells) placed in a distilled water solution
usually swell up and burst. What prevented the red onion cells from swelling up
and bursting when they were placed in the distilled water?
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C. How does the cell membrane help to maintain the homeostasis of water
content?
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D. If a bowl of fresh strawberries is sprinkled with sugar, a few minutes later the
berries will be covered with juice. Why? Use the terms: osmosis, concentration
gradient, high concentration, low concentration and cell membrane to explain your
answer.
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V. QUESTIONS FOR RESEARCH:
1. Define
(a.) diffusion:
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(b.) osmosis:
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2. Cite a specific example by which (a.) diffusion, (b.) osmosis and (c.) active
transport is demonstrated within a plant cell.
Diffusion:
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Osmosis:
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Active transport:
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3. Plants can be killed by sprinkling salt on the ground around them and then
watering.
Explain
(a.) why the plants die
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NAME: ___________________________ INSTRUCTOR: _____________
EXERCISE NO. 5
PLANT TISSUES
In this exercise, you should become familiar with several kinds of cells and
tissues. As you study each kind of cell, correlate its structure with its function. All
organs of a plant are composed of the same basic tissue systems and the different
arrangements of these systems are the result of adaptations for specific functions.
II. MATERIALS:
Compound microscope
Prepared slides of:
Onion root tip
Cadena de amor
Tilia leaf
Vicia faba
Helianthus stem
Stone cells,
Tangential section of wood,
Ranunculus root
Cork
Textbooks and references.
III. PROCEDURE:
Take note that with the stains most frequently used in making permanent
prepared slides, lignified cell walls usually will be stained red, whereas cell walls
composed mainly of cellulose will be stained some shade of blue or green.
Focus each slide under LPO, (take pictures) and locate the different tissues
indicated. Pay particular attention to the characteristics of the cells comprising the
tissues.
h. Cork cells
These are flattened, thin- walled cells with little or no intercellular spaces.
These make up the periderm that constitutes the outer bark of a woody
stem.
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IV. ILLUSTRATIONS:
Allium cepa
root
(Meristematic
tissues)
Tilia leaf
(Upper and
lower
epidermis)
Vicia faba
(Parenchyma
tissues)
Cadena de
amor
(Collenchyma
tissues)
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Stone cells
(Sclereids)
Helianthus
stem
(Reticulate
vessels,
annular
vessels,
spiral
vessels,
pitted
vessels)
Tangential
section of
wood
(Tracheids ,
vascular ray)
Cork
(Cork cells)
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V. QUESTIONS FOR RESEARCH:
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3. Tabulate the complex conducting tissues as to their descriptions and
functions.
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4. Differentiate primary and secondary growths in plants.
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6. What are secondary metabolites? In what type of cells or tissues are they
produced and how are they compartmentalized within the cells?
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NAME: ___________________________ INSTRUCTOR: _____________
EXERCISE NO. 6
PLANT DIVERSITY
Plant tissues are organized to form three different vegetative organs: the root,
the stem, and the leaves. In this exercise, you will be able to differentiate the two
broad classes of angiosperms or flowering plants; the dicotyledonae (dicots) and the
monocotyledonae (monocots), basing on the gross structure of their root system,
stem, cotyledons, and leaves.
I. OBJECTIVES: After completing this exercise, you should be able to identify the
parts of a typical plant and give the function of each part, and compare the parts of
a monocot with those of a dicot plant. In addition, you should be able to know how
plants are classified and named.
II. MATERIALS:
Corn seeds Textbooks and references
Bean seeds
III. PROCEDURE:
A. Monocot vs Dicot
1. Examine a complete dicot plant (bean) and its parts. Note the
characteristics of its cotyledons, roots, leaves and stem.
2. Examine a complete monocot plant (corn) and its parts. Note the
characteristics of its cotyledon, roots, leaves and stem.
3. Compare and contrast the gross characteristics of a monocot from that of
a dicot.
B. Plant Diversity
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Monocot
Common Scientific Family Woody/ Pharmacological
name name name herbaceous Use/s
Dicot
Common Scientific Family Woody/ Pharmacological
name name name herbaceous Use/s
IV. ILLUSTRATIONS:
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2. What is dichotomous key? Cite a specific example of how a plant is classified
using dichotomous key.
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3. Discuss the significance of plant classification in pharmacy.
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NAME: ___________________________ INSTRUCTOR: _____________
EXERCISE NO. 7
ROOTS
This exercise enables you to learn the different root systems, root regions and
their functions, and the arrangement of vascular tissues in roots that allows for
efficient transport of water and substances, the different specialized roots and the
observation of the economic and pharmaceutical importance of roots.
I. OBJECTIVES: After completing this exercise, you should be able to identify the
different types of root systems, identify and describe the growth regions of the root,
locate the internal parts of a root cross section, describe the transport system in the
roots, and give examples of economic and pharmaceutical uses of roots.
II. MATERIALS:
Compound microscope
Prepared slides of monocot root and dicot root (cross section)
Textbooks and references
III. PROCEDURE:
A. Root systems
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