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Cellular Signalling
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A R T I C LE I N FO A B S T R A C T
Keywords: YES is a member of the SRC family kinase (SFK) group of non-receptor tyrosine kinases, which are implicated in
YES multiple key cellular processes involved in oncogenesis. Antitubulin agents have been widely used as che-
Mitotic phosphorylation motherapeutics for cancer patients and these drugs arrest cells in mitosis, leading to subsequent cell death. In the
CDK1 present study, we define a mechanism for phospho-regulation of YES that is critical for its role in response to
Taxol sensitivity
antitubulin agents. Specifically, we found that YES is phosphorylated at multiple sites on its N-terminal unique
Chemotherapy
domain by the cell cycle kinase CDK1 during antitubulin drug-induced mitotic arrest. Phosphorylation of YES
occurs during normal mitosis. Deletion of YES causes arrest in prometaphase and polyploidy in a p53-in-
dependent manner. We further show that YES regulates antitubulin chemosensitivity. Importantly, mitotic
phosphorylation is essential for these effects. In support of our findings, we found that YES expression is high in
recurrent ovarian cancer patients. Finally, through expression profiling, we documented that YES phosphor-
ylation affects expression of multiple cell cycle regulators. Collectively, our results reveal a previously un-
recognized mechanism for controlling the activity of YES during antitubulin chemotherapeutic treatment and
suggest YES as a potential target for the treatment of antitubulin-resistant cancer.
1. Introduction various cell types, while the expression of other members is restricted to
specific tissues [5,6]. The catalytic activity of SFKs is mainly regulated
Antitubulin drugs, such as paclitaxel (taxol) and vinblastine, are at two highly conserved tyrosine residues: the autophosphorylation site
widely used for various malignancies, including ovarian, breast, and Y419 (numbering in SRC) in the activation loop and Y530 at the ex-
non-small cell lung cancers [1–3]. These drugs induce mitotic arrest treme C-terminus regulatory tail. While phosphorylation of Y419 pro-
through activation of the spindle checkpoint and subsequent apoptotic motes kinase activity, increased Y530 phosphorylation inhibits SRC
cell death. However, despite their wide use in cancer treatment, patient catalytic ability [7]. Previous reports showed that YES is oncogenic in
response is highly variable, with drug resistance remaining a major malignant mesothelioma [8], melanoma [9], and colorectal cancer cells
clinical issue [3,4]. Thus, identification of new regulators and/or sig- [10]. A recent study also showed that aberrant YES expression affects
naling pathways that are triggered by antitubulin agents may provide cell cycle progression and apoptosis in ovarian cancer cells [11]. De-
useful information on mechanisms underlying chemoresistance and spite the oncogenic function of YES, its role and regulation in response
lead to the development of novel prognostic and/or therapeutic ap- to antitubulin chemotherapeutics have not been defined.
proaches related to antitubulin chemotherapeutics. Here we present that YES is hyperphosphorylated during anti-
The SFKs are implicated in multiple signaling processes in onco- tubulin drug-induced mitotic arrest and dysregulation of YES influences
genesis [5]. The SFKs include nine members: SRC, YES, LYN, FYN, FGR, antitubulin chemosensitivity. We further characterized the phosphor-
HCK, LCK, BLK, and YRK [5]. SRC, YES, LYN, and FYN are expressed in ylation sites, the corresponding kinase, and the functional significance
Abbreviations: CDK1, cyclin-dependent kinase 1; CDKN1A (p21), cyclin-dependent kinase inhibitor 1A; CRISPR, clustered regularly-interspaced short palindromic
repeats; KO, knockout; Plk1, Polo-like kinase 1; RBL1, RB-like protein 1; SFK, Src family non-receptor tyrosine kinase; YAP, Yes-associated protein
⁎
Corresponding author.
E-mail address: dongj@unmc.edu (J. Dong).
https://doi.org/10.1016/j.cellsig.2018.09.007
Received 23 July 2018; Received in revised form 9 September 2018; Accepted 10 September 2018
Available online 15 September 2018
0898-6568/ © 2018 Elsevier Inc. All rights reserved.
Z. Wang et al. Cellular Signalling 52 (2018) 137–146
of the phosphorylation. Our data reveal a new layer of regulation for 2.5. Antibodies
YES activity in response to antitubulin chemotherapeutics, suggesting
YES as a potential target for the treatment of antitubulin drug-resistant Anti-YES antibodies from BD Biosciences (Cat. No. 610375, CA,
cancer patients. USA) were used for Western blotting throughout the study. Rabbit
polyclonal phospho-specific antibodies against YES S11, T21, S40, T60,
2. Materials and methods and T69 were generated and purified by AbMart (Shanghai, China). The
peptides for generating the phospho-antibodies are as follows: SKENK-
2.1. Expression constructs, cell culture and transfection pS-PAIKY (pS11); VRPEN-pT-PEPVS (pT21); EPTTV-pS-PCPSS (pS40);
SSLSM-pT-PFGGS (pT60); and GSSGV-pT-PFGGA (pT69). The corre-
Full-length human YES cDNA was a gift from William Hahn sponding non-phospho-peptides were also synthesized for antibody
(Addgene 23,938, pDONR223-YES1). To make the lentiviral-mediated purification. Anti-β-actin, anti-cyclin B, and anti-CDC27 antibodies
Flag-tagged YES expression construct, the abovementioned cDNA was were from Santa Cruz Biotechnology. Anti-GST, -Aurora-A, -Lats1, and
cloned into pSIN4-Flag-IRES vector [12]. Point mutations were gener- -Lats2 antibodies were from Bethyl Laboratories (TX, USA). Anti-p-
ated by the QuikChange Site-Directed PCR Mutagenesis Kit (Stratagene, T288/T232/T198 Aurora-A/B/C, -p-S10 H3, -p-S642 Wee1, -Wee1, -p-
CA, USA) and verified by sequencing. Y15 CDK1, -CDK1, -p-T160 CDK2, -CDK2, -CDC20, -p21, -p53, -p-S127
HEK293T, HeLa, U2OS, and OVCAR8 cell lines were purchased from YAP, -p-S397 YAP, -YAP, -p-Lats1/2 T1079/T1041, -p-Y419 SRC, -p-
American Type Culture Collection (ATCC, VA, USA) and were main- Y530 SRC, -LYN, -FYN, -SRC, and -HCK antibodies were from Cell
tained in DMEM media supplemented with 10% FBS and 1% anti- Signaling Technology (MA, USA). Anti-Flag and anti-β-tubulin (for
biotics. The HEK293T, HeLa, U2OS, and OVCAR8 cell lines were au- immunofluorescence staining) antibodies were from Sigma.
thenticated at ATCC and used at low passages. HCT116 and HCT116-
p53−/− cell lines were kindly provided by Dr. Bert Vogelstein (Johns 2.6. Immunofluorescence staining and confocal microscopy
Hopkins University) and were cultured with McCoy's 5A medium.
Attractene (Qiagen, MD, USA) was used for transient overexpression Cell fixation, permeabilization, fluorescence staining, and micro-
following the manufacturer's instructions. Nocodazole (100 ng/ml for scopy were done as previously described [16]. The stained cells were
16–20 h) and taxol (0.1 μM for 16 h) were used to arrest cells in G2/M mounted with Fluoromount (Vector Laboratories, CA, USA) and vi-
phase unless otherwise indicated. The VX680 (Aurora-A, eB, eC in- sualized on an LSM710 or LSM 800 Zeiss fluorescence microscope (Carl
hibitor), ZM447439 (Aurora-B, eC inhibitor), and BI2536 (Plk1 in- Zeiss, NY, USA). The Slidebook 4.2 software (Intelligent Imaging In-
hibitor) were from Selleck Chemicals (TX, USA). The MK5108 (Aurora- novations, CO, USA) was used for analyzing and processing all im-
A inhibitor) was from Merck (NJ, USA), and RO3306 (CDK1 inhibitor) munofluorescence images.
and Purvalanol A (CDK1/2/5 inhibitor) were from ENZO Life Sciences
(NY, USA). All other chemicals were either from Sigma (MO, USA) or 2.7. Quantitative real time PCR
Thermo Fisher (MA, USA).
Total RNA isolation, RNA reverse transcription and quantitative real
2.2. Cell line establishment time-PCR were done as we have described previously [13]. The primer
sequences were as follows: 5′-AAGACCATGTGGACCTGTCACTG (p21-
Stable overexpression and re-expression of YES (wild type and Forward), 5′-AGGGCTTCCTCTTGGAGAAGATC (p21-Reverse), 5′-GAA
mutants) in YES-knockout (KO) cells were achieved by lentivirus- CCACCAAAGTTACCACGA (RBL1-Forward), and 5′-ATTAAACAGATCC
mediated infection. Lentivirus packaging, infection, and subsequent TTAACACTGCAAG (RBL1-Reverse). The RT2 cell cycle arrays (Qiagen)
selection were done as we have described previously [13]. Gene were used, and experiments and data analysis were performed fol-
knockout was achieved by a CRISPR-mediated method. CRISPR/double lowing manufacturer's instructions.
nickase knockout plasmids were purchased from Santa Cruz Bio-
technology (SC-400261-NIC-2) (TX, USA) and transfection and clone 2.8. Flow cytometry
selection were done as instructed by the manufacturer.
DNA contents among cell lines were quantified via propidium iodide
2.3. Phos-tag and Western blot analysis (PI) staining followed by flow cytometry analysis. Briefly, 1 × 106 cells
were suspended in 100 μl PBS buffer and fixed by adding 1 ml 70%
Phos-tag™ was purchased from Wako Pure Chemical Industries, Ltd. ethanol in −20 °C for an overnight. The cells were then mixed with
(304–93,521) (VA, USA) and used at 10 or 20 μM (with 100 μM MnCl2) 0.5 ml FxCycle™ PI/RNase Staining Solution (Invitrogen, F10797, MA,
in 8% SDS-acrylamide gels as we described previously [14]. Western USA) and incubated for 30 min at room temperature in dark. The
blotting, immunoprecipitation, and lambda phosphatase treatment as- samples were analyzed by a FACSCalibur flow cytometer (Excitation at
says were done as described [13]. 488 nm/Emission at 530 nm). Profiles of cell cycle and polyploidy were
examined by a standard method.
2.4. Recombinant protein purification and In vitro kinase assay
2.9. Annexin V/PI staining
YES cDNA (encodes amino acids 1–300 of YES) was cloned into the
pGEX-5×-1 vector. The glutathione S-transferase (GST)-tagged proteins The Dead Cell Apoptosis Kit with Annexin V Alexa Fluor™ 488 and
were bacterially expressed and purified on GSTrap FF affinity columns propidium iodide (Invitrogen, V13241) was used for examination of
(GE Healthcare, IL, USA) following the manufacturer's instructions. apoptosis. Cells were seeded in 6-well plates at a density of 70–80% in
GST-YES or GST-YES-5A (0.5–1 μg each) was incubated with 10 U re- duplicate. HeLa cells were treated with taxol at 50 nM for 24 h and
combinant CDK1/cyclin B complex (New England Biolabs, MA, USA) in OVCAR8 cells were treated with taxol at 20 nM for 24 h. Cell suspension
kinase buffer [15] in the presence of 5 μCi γ-32P-ATP (3000 Ci/mmol, preparation and staining was followed by procedures described in the
PerkinElmer, MA, USA). The samples were resolved by SDS-PAGE, manufacturer's manual. Stained cells were analyzed by flow cytometry
transferred onto PVDF (Millipore, MA, USA) and visualized by auto- with fluorescence emission at 530 and 575 nm. Both early (Annexin V
radiography followed by Western blotting or detected by phospho- positive/PI negative) and late (Annexin V positive/PI positive) apop-
specific antibodies. totic proportions for each population were included.
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Z. Wang et al. Cellular Signalling 52 (2018) 137–146
2.10. Statistical analysis 3.2. Identification of the corresponding kinase for YES phosphorylation
Statistical significance was performed using a two-tailed, unpaired Upon treatment of antitubulin agents, several mitotic kinases, in-
Student's t-test. cluding CDK1 (Cyclin-dependent kinase 1), Aurora, and Plk1 (Polo-like
kinase 1), are activated [17]. Inhibition of Aurora (with VX-680 for
3. Results Aurora-A, B, C, and MK5108 for Aurora-A) and Plk1 (with BI2536)
kinases did not alter the YES phosphorylation (data not shown). In-
3.1. YES is phosphorylated during antitubulin drug-induced mitotic arrest terestingly, addition of RO3306 (a CDK1 inhibitor) or Purvalanol A
(inhibits CDK1, 2, 5) largely reverted the mobility shift induced by taxol
To explore how YES and other SFKs are regulated during antitubulin in both HeLa and U2OS cells (Fig. 2A), suggesting that CDK1 is likely
agent treatment, we treated HeLa cells with paclitaxel (taxol) or no- the kinase for YES phosphorylation during antitubulin agent-induced
codazole (which both interfere with microtubules and arrest cells in mitotic arrest.
prometaphase) and examined their responses during mitotic arrest
using a Phos-tag approach. As shown in Fig. 1A, B, the most prominent 3.3. CDK1 phosphorylates YES in vitro
change we observed was the dramatic mobility up-shift of YES and, to a
lesser extent, of SRC (Fig. 1A, B). Lambda phosphatase treatment lar- CDK1 recognizes a minimal S/T-P consensus sequence [18]. YES
gely converted slow-migrating bands to fast-migrating bands, in- contains five S/TPs (S11, T21, S40, T60, and T69) (Fig. 2B). All five
dicating that the mobility shift of YES during mitotic arrest is caused by sites are located in the N-terminus (which is not conserved within the
phosphorylation (Fig. 1C). Phosphorylation of YES was also evident in SRC family) and are unique to YES, consistent with our observations
U2OS and HCT116 cells, suggesting this phospho-regulation is not cell that among the SRC family proteins, YES was the most heavily phos-
type-specific (Fig. 1D). YES is a tyrosine kinase and its catalytic activity phorylated in response to antitubulin drugs.
is regulated by phosphorylation at Y430 (main autophosphorylation To determine whether CDK1 kinase can directly phosphorylate YES,
site, Y419 in SRC) and Y537 (Y530 in SRC) [5,7]. We further explored we performed in vitro kinase assays with GST-tagged YES as substrates.
whether the kinase activity is required for YES mitotic phosphorylation. Purified CDK1/cyclin B complex readily phosphorylated GST-YES in
Transfected YES-KD (kinase dead, K305 M) and YES-Y537F (nonpho- vitro (Fig. 2C). Importantly, mutating these five sites to alanines (GST-
sphorylatable mutant) were still shifted during taxol-induced mitotic YES-5A) almost completely abolished the 32P incorporation, suggesting
arrest (Fig. 1E), suggesting that the mobility shift/phosphorylation of that this N-terminal S/TP cluster is the major phosphorylation region of
YES was likely not due to the phosphorylation at Y430 and or Y537. YES (Fig. 2C). We generated phospho-specific antibodies against S11,
These observations suggest that YES is phosphorylated on novel sites T21, S40, T60, and T69 and in vitro kinase assays confirmed that all
other than Y430 and Y537 in response to antitubulin drugs. these sites (except S11) were phosphorylated in the presence of CDK1/
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cyclin B complex (Fig. 2D), suggesting that CDK1 directly phosphor- this phenotype was rescued by re-expression of YES-WT, but not the
ylates YES in vitro. YES-5A mutant (Fig. 4D). Together, these observations suggest that YES
and its mitotic phosphorylation are required for prometaphase to me-
taphase progression.
3.4. CDK1 phosphorylates YES in cells
To explore whether T21, S40, T60, and T69 are also phosphorylated 3.6. YES knockout leads to tetraploidy independent of p53, but is
within cells during taxol-induced mitotic arrest, we transfected Flag- phosphorylation-dependent
tagged YES or a corresponding non-phosphorylatable mutant (YES-5A)
into cells, treated the cells with taxol, and determined levels of phos- We further examined YES localization during cell cycle progression.
phorylation by phospho-antibodies. Taxol treatment significantly in- In both interphase (YES is not phosphorylated) and mitotic cells (YES is
creased the phosphorylation of T21, S40, T60, and T69. The signal was phosphorylated), YES is mainly localized in cell membrane area and
abolished by mutating these sites to alanines (Fig. 3A), confirming the does not have obvious colocalization with microtubule (Fig. 5A).
specificity of these phospho-specific antibodies. Addition of RO3306 or Mitotic defects often lead to genomic instability. We quantified the
Purvalanol A abolished the phosphorylation induced by taxol (Fig. 3B), ploidy changes resulting from knockout of YES. Utilizing flow cyto-
suggesting that phosphorylation of YES is CDK1 kinase dependent. metry, we discovered that the number of tetraploid cells significantly
We next examined whether these sites affect the mobility of YES increased in YES KO HeLa cells (Fig. 5B, C). Similar results, to a lesser
during taxol treatment. For this purpose, we deleted endogenous YES extent, were observed in HCT116 cells (Fig. 5D). This phenotype was
and re-expressed wild type (WT) YES or YES-5A mutant and compared independent of p53 status since p53 KO did not affect YES KO-driven
their mobility shift in the presence of taxol. Mutation of all five sites tetraploidy (Fig. 5D). WT YES, but not YES-5A mutant, reconstitution
largely abolished the mobility shift of YES, suggesting that these N- completely restored these tetraploid cells to diploid cells (Fig. 5B, C),
terminal five sites are the main phosphorylation region responsible for indicating that mitotic phosphorylation of YES is required for main-
mobility shift of YES upon taxol treatment (Fig. 3C). Together, our data taining genome integrity.
identified novel phosphorylation of YES and phosphorylation occurs in
a CDK1-dependent manner during taxol-induced mitotic arrest. We
3.7. YES regulates expression of multiple cell cycle regulators
further showed that the nonphosphorylatable mutant (YES-5A) com-
pletely lost its Y430 and Y537 phosphorylation, suggesting that CDK1-
Given the sequence similarity and functional conservation among
mediated mitotic phosphorylation is required for YES kinase activity
the SFKs, we determined whether YES deletion affects expression of
(Fig. 3D).
other SFKs. Fig. 6A shows that FYN levels were increased in YES-KO
HeLa cells but not in HCT116 cells (Fig. 6A). LYN and SRC levels were
3.5. Phosphorylation of YES is essential for proper mitotic progression not altered upon YES inactivation. Interestingly, LYN, but not YES, SRC,
or FYN, expression levels were reduced in p53-KO HCT116 cells
We next examined whether YES or its phosphorylation is involved in (Fig. 6A).
mitotic progression. To do so, we generated YES knockout (KO) HeLa An earlier study identified YAP, a critical effector of the Hippo-YAP
cells using CRISPR/Cas9-nickase (Cas9n) (Fig. 4A). Knockout of YES signaling [19–21], as a YES-associated protein [22], so we also ex-
resulted in moderate but significant mitotic arrest in HeLa cells amined total and phospho-YAP levels in parental and YES KO cells to
(Fig. 4B). Adding back YES-WT completely rescued the effects, how- determine if loss of YES would affect the status of YAP. We detected no
ever, re-expression of YES-5A failed to do so, indicating that mitotic noticeable changes to the total YAP protein level and phosphorylation
phosphorylation is required for mitotic progression (Fig. 4B). We fur- levels at S127 and S397 (two major Hippo-mediated inactivating
ther used a double thymidine block and release approach in these cell phosphorylation sites [23–25]) (Fig. 6B).
lines to determine which mitotic phase is affected. Fig. 4C shows that a We next explored the downstream effectors/signaling regulated by
significantly higher percentage of cells was observed in prometaphase YES using two approaches. First, we screened several well-known cell-
in YES-KO cells when compared with parental cells (Fig. 4C, D). Again, cycle regulators in parental and YES-KO HeLa cells to attempt to
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Z. Wang et al. Cellular Signalling 52 (2018) 137–146
identify proteins with altered expression or phosphorylation levels be- 3.8. YES and its phosphorylation controls taxol chemosensitivity
tween the two cell lines (Fig. 6C). Interestingly, both p21 and p53
protein levels were significantly increased upon loss of YES and their Antitubulin drugs are widely used in cancer patients and drug re-
expression was restored by re-expression of YES-WT (Fig. 6C, D). Again, sistance is a major barrier in clinical treatment of cancer. Given the
YES-5A failed to rescue p21 and p53 levels in YES-KO cells, suggesting response of YES to antitubulin agents, we examined whether YES and
that the mitotic phosphorylation of YES is required for controlling p21 its phosphorylation are involved in antitubulin drug-driven cytotoxi-
and p53 expression (Fig. 6D). Increased p53 expression is unlikely due city. Deletion of YES did not cause significant apoptosis under normal
to DNA damage since YES deletion failed to cause significant DNA conditions (Fig. 7A). Apoptosis was greatly increased (as revealed by
damage revealed by phospho-Chk1/2 and phospho-p53 (Fig. 6E). We cleaved PARP and Annexin-V staining) under taxol treatment in YES
also found a small portion of CDC27 (Cell Division Cycle 27), a mitotic knockout cells compared to that in parental cells (Fig. 7A, B). Re-ex-
regulator, was phosphorylated in YES-KO cells (Fig. 6C, D). Second, we pression of YES-WT, but not YES-5A mutant, largely rescued the taxol
performed an mRNA array analysis involving 84 cell cycle regulators in sensitivity, suggesting that YES and its mitotic phosphorylation confer
control and YES-KO cells. Eight genes were upregulated and one gene taxol resistance (Fig. 7A, B). In line with this loss-of-function observa-
was downregulated in YES-KO cells compared with parental cells tion, overexpression of YES-WT, but not the YES-5A mutant, in
(Fig. 6F). Of note, the mRNA levels of p53 were only modestly in- OVCAR8 (a high-grade serous ovarian cancer cell line) resulted in fewer
creased (1.5 fold, G11 in the array). We confirmed by qRT-PCR that p21 apoptotic cells compared with controls under taxol treatment (Fig. 7C-
(CDKN1A: cyclin-dependent kinase inhibitor) mRNA levels were in- E).
creased (Fig. 6F, G). Consistent with the results in Fig. 6D, re-expression We analyzed the mRNA levels of YES in paired, recurrent post-
of YES-5A was not able to restore p21 expression (Fig. 6G). We also chemotherapy high grade serous ovarian cancer and their primary
confirmed that RB-like protein 1 (RBL1) mRNA levels were increased untreated tumors, using RNA-seq data published by Patch et al. [26]. Of
(Fig. 6F, G). The YES-5A mutant has similar activity to WT YES in interest, expression of YES was higher (> 1.5 fold) in 5 cases of 12
rescuing RBL1 mRNA levels, suggesting that YES phosphorylation is recurrent tumors compared to matched primary tumors (Fig. 7F). In-
dispensable in controlling RBL1 expression (Fig. 6G). Together, these creased expression with chemoresistance was much more common than
observations suggest that YES regulates expression of multiple cell cycle decreased expression. These data support a potential association be-
regulators. tween YES upregulation with taxol chemoresistance.
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Activation of SFKs (e.g. SRC, YES, and LYN) has been well docu- only two S/TP sites (T47 and S75), and FYN (T45) and LCK (S59)
mented in antitubulin agent-arrested mitotic cells and in normal mitosis contains only one in this region, supporting the observation that YES
[6,37]. Furthermore, activation of SFKs is essential for mitotic pro- has the most mobility retardation due to phosphorylation. LYN does not
gression since inhibition of SFKs blocks metaphase progression [38,39] have any S/TP consensus sequences in this domain. Of note, SRC (T47
and cytokinesis [40,41]. Phosphorylation and regulation on serine/ and S75) and LCK (S59) have been shown to be phosphorylated by
threonine in the unique N-terminal region of SFKs are much less stu- CDK1 during mitosis, but it has remained elusive whether their phos-
died. In response to antitubulin agents, the most significant mobility phorylation is involved in antitubulin agent-induced cell death. Future
change/phosphorylation was observed in YES among these SFKs ex- studies are also required to elucidate the overlapping and distinct roles
amined (Fig. 1) and this mobility retardation is not due to tyrosine among the SFKs in mediating antitubulin chemosensitivity in different
phosphorylation and activation. The current study identified novel cell types.
phosphorylation of YES during antitubulin agent-induced mitotic ar- While the YES kinase activity is not required for its N-terminal
rest. Phosphorylation occurs at multiple sites on its N-terminal variable serine/threonine phosphorylation in response to antitubulin agents
region (S11, T21, S40, T60, and T69) (Figs. 2, 3). Interestingly, SRC has (Fig. 1E), the phosphorylation is essential for YES kinase activity and
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