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BENTHAM Editor-in-Chief:
SCIENCE Ben M. Dunn
Bushra Uzair1, Barkat A. Khan2,*, Noureen Sharif1, Faiza Shabbir1 and Farid Menaa3
1
Department of Biotechnology and Bioinformatics, Islamic International University, Islamabad, Pakistan; 2Department
of Pharmaceutics, Faculty of Pharmacy, Gomal University, D.I Khan, Pakistan; 3Department of Pharmaceutical
Sciences and Nanomedicine, Fluorotronics, San Diego, CA, USA
Abstract: Background: Snake venom, a highly poisonous and active venomous snake’s secretion,
is a complex mixture of inorganic cations, carbohydrates, lipids, proteins, peptides, toxins and hy-
drolytic enzymes of importance including Phosphodiesterases (PDEs). These snake venom hydro-
lytic enzymes interfere in different physiological processes. Snake venom PDEs have several roles
to metabolize extracellular nucleotides and to regulate nucleotide based intercellular signalling
ARTICLE HISTORY
mechanisms including platelet aggregation, which can lead to death and debilitation in cardiac ar-
rest and strokes in patients having cerebro-vascular and cardiovascular diseases, hypertension and
Received: January 28, 2017
Revised: April 23, 2017 atherosclerosis which is the primary cause of life-threatening diseases such as, stroke and myocar-
Accepted: March 12, 2018
dial-infarction.
DOI:
Conclusion: PDEs are used to synthesize modified oligonucleotides, which are useful in potential
10.2174/0929866525666180628160616 therapeutic applications. Characterization of PDEs from different snake venoms has potential in
identifying new anticoagulants that target specific active sites, which leads to the treatment of hae-
mostatic disorders. Here, we review the snake venom PDEs potential therapeutic activity against
platelet aggregation which could provide ideal platforms to design drugs for treatment or to fight
Protein & Peptide Letters
ers are PDEs that require divalent metal ion and basic pH for
their enzymatic activity [4, 5]. Almost all PDEs become ac-
tive at basic pH and their further activity requires divalent
metal ion [4, 5]. The DNase activity of phosphodiesterase
has also been reported by Sittenfeld [10] and this activity
was calculated at pH 7.0 by utilizing the DNA of calf thy-
mus. A research study by de Roodt et al. [11] showed that
activity on plasmid and DNA of calf thymus in zymogram is
because of DNase [9]. Current research study conducted by
PDE
de Roodt et al. [11] showed that DNase activity on calf thy-
mus DNA and plasmid in zymogram is due to PDE instead Figure 2. Hydrolysis of 3’, 5’-cAMP by venom phosphodiesterase.
of DNase because EDTA inhibited the activity [9]. Enzyme action (arrow) typically liberates 5’-AMP [5].
Query seq.
active site
M92+ binding site
cellular disruption there was adequate substrate availability tics. Method of therapeutic oligonucleotide synthesis have
for the PDE in circulatory system that resulted in hypoten- also been disclosed [45].
sion. Furthermore, PDEs possess the ability to hydrolyze a
PDE activity is recognized from the venoms of many
wide range of biologically important nucleotides such as
snakes. It has been recovered from a number of venom-gland
NADP+, NAD +, GDP, and ATP. However, PDEs have not transtriptome libraries, including those of elapid snakes [46]
been investigated for other potential pharmacological activi-
and viperid snakes (such as Sistrurus catenalus edwardsii)
ties [9].
[32].
Previously toxicologists showed less interest in these
enzymes because of their only involvement in digestion and 2.2. Snake Venom PDEs Anticoagulant Therapeutic Ac-
no other toxicological activities, so are less characterized for tivity in Platelet Aggregation
their pharmacological activities [3, 4, 5].
With an alarming increase in arthrosclerosis that leads to
life threatening disease like myocardial infarction and
2. SNAKE VENOM PDEs IN THERAPEUTICS
strokes, scientists and researchers are looking for highly spe-
Recently, toxicologists showed an improved interest in cific and potent anticoagulants for the treatment of these
these enzymes, because these enzymes have functions to deadly diseases. Snake venom PDEs therapeutic potential
liberate endogenously, so, these are responsible to work like against platelet aggregation provides alternate highly specific
multi-toxins [3, 20]. Thermal stability, higher catalytic effi- and potent anticoagulants for the treatment of these diseases
ciency, and resistance to proteolysis make these enzymes [40].
attractive models for structural biologists, biochemists, en-
zymologists for the treatment of various diseases like erectile 2.3. PDE from Bothrops jararaca Snake Venom
dysfunction, inflammatory diseases, Alzheimer’s disease,
cardiac and vascular associated diseases [35]. Santoro et al. isolated and functionally characterized a
soluble phospho-diesterase from venom of Bothrops jara-
Researchers reported that enzymes in snake venoms have raca, which showed amino acids sequence resemblance to
an intriguing phenomenon both from a biological and chemi- mammalian Nucleotide Pyrophosphatase/Phosphodiesterase
cal point of view. These proteins have the potential to modu- 3 (NPP3). This enzyme is reported to inhibit platelet aggre-
late the physiological reactions by envenomated animals, gation induced by ADP. This has a 228 kDa molecular mass
hence these make an obvious promise as prospective phar- estimated by size exclusion chromatography. NPPBJ exhibits
macological tools and drug leads. PDEs are particularly at- nuclease, phosphatase and pyrophosphatase activities, pref-
tractive for researchers in the field of pharmacology [37-39]. erably hydrolyzes the nucleoside 5′-triphosphates over nu-
The field of PDE research advanced the development of new cleoside 5′-diphosphates. It was not activated upon nucleo-
drugs for atherosclerosis which is increasing at an alarming side 5′-monophosphates. Based on substrates used, dithio-
rate [40]. threitol and EDTA inhibited the NPP-BJ catalytic activity
differently. ADP induced platelet aggregation was also abol-
2.1. Snake Venom PDEs in Oligonucleotides Synthesis ished by NPP-BJ, but platelet aggregation induced by throm-
bin was slightly attenuated. Polyclonal antibodies produced
PDEs endonucleolytic activities towards single-stranded
DNA have been used for sequencing oligonucleotides and against NPP-BJ enzyme did not eradicate the snake B. jara-
raca venom lethal activity. Results showed interference of
polynucleotides [8, 41-43].
NPP-BJ with mechanisms of platelet aggregation induced by
Recently, Matsuda has utilized the snake venom phos- ADP [47].
phodiesterase in the development of highly nuclease-
resistant chemically adapted therapeutic oligonucleotide 2.4. PDE-I from Agistrodon bilineatus Snake Venom
[44]. PDEs are used in therapeutic oligonucleotide analogues
synthesis. Replacement of the normal phosphodiester inter- In 2009 S.S. Al-Saleh et al purified Phosphodiesterase I
sugar linkages found in natural oligomers having four atoms (PDE-I, EC 3.1.4.1) from Agistrodon bilineatus snake
linked with groups, form unique di- and poly-nucleotides and venom having a molecular mass of 140 kDa. The results
nucleosides useful to regulate RNA expression and therapeu- showed that β -mercaptoethanol treatment did not changed
616 Protein & Peptide Letters, 2018, Vol. 25, No. 7 Uzair et al.
the location of the band; this signifies that protein has no disulphide linkage and, having 100 kDa molecular mass and
subunits. There were no alkaline phosphatase and 5’- isoelectric point of 5.1, respectively. Among all reported
nucleotidase activities in the enzyme. Its optimum pH range PDEs, TS-PDE is the only PDE that accommodates both of
is 9.0-11.0 and optimum temperature is 60ºC. Its activity endogenous Zn2+ and Cu2+ (essential for its phosphodi-
decreases at >65ºC. PDE-I is glycoprotein with carbohydrate esterase activity). The purified TS-PDE exhibited wide PDE
content of 14%. Non-competitive inhibition is caused by substrates range. The specificity order is: nicotinamide gua-
cysteine with a Ki=6.3×10−3 M (IC50 of 1.6 mM) and com- nine dinucleotide > ATP > NAD > ADP. It showed exonu-
petitive inhibition was caused by ADP. EDTA, zinc, o- clease property with no contamination of either 5′-
phenanthroline and Glutathione inhibited the enzyme activity nucleotidase or alkaline phosphatase activity. It is reported to
and Mg2+ potentiated the PDE-I enzyme activity slightly. strongly inhibit platelet aggregation induced by ADP in hu-
Thymidine 5’-monophosphate p-nitro-phenyl ester is most man platelet-rich plasma by ADP hydrolysis. Novel TS-PDE
readily hydrolyzed (10-fold) by this enzyme and 3’-5’-cAMP is a unique PDE having different structure from all well-
substrate is hydrolyzed least readily. In mice the concentra- known PDEs [35].
tion of enzyme up to 4.0 mg/Kg i.p. was not found to be le-
thal. Anticoagulant effect is exhibited and also increased the 2.8. Dr-PDE from Daboia russeli russelli Snake
normal clotting time of normal citrated plasma of human,
whereas crude venom exhibited strong coagulant effect [48]. Mitra and Bhattacharyya in 2014 purified Daboia russeli
russelli (Dr-PDE) PDE from Russell’s viper venom. It was
inactivated by metal chelators and polyvalent anti-venom
2.5. PDE-1 from King Cobra (Ophiophagus hannah)
serum. DR-PDE hydrolyzed ADP and inhibited platelet ag-
Venom
gregation induced by ADP in platelet rich plasma of human
S.U. Khan et al. (2009) have purified PDE-1 from O. [12].
Hannah having molecular mass 148 kDa. The enzyme is free
from alkaline phosphatase and 5’-nucleotidase activities. The 2.9. VLPDE from Vipera lebetina Snake Venom
enzyme indicated an optimum pH of 10.0 in Tris-HCl buffer.
The optimum temperature was found to be 50ºC. The PDE-1 Katrin et al. in 2014 isolated, characterized and eluci-
is a glycoprotein and exhibited basic pI. Cysteine caused a dated the structural properties of a phosphodiesterase from
non-competitive inhibition. The Adenosine Diphosphate Vipera lebetina venom (VLPDE). Cloning and sequencing
(ADP) caused a competitive inhibition. Glutathione, o- studies showed that cDNA encoding VLPDE is consist of a
phenanthroline, Zinc and EDTA inhibited the PDE-1 activ- sequence of 2772 nt (nucleotides) having an ORF consist-
ity, whereas magnesium slightly potentiated the activity. The ing of 2556 nt and translated product is comprised of a total
enzyme hydrolyzed thymidine 5’-mono phosphate p- nitro- of 851 amino acids together with a signal peptide comprised
phenyl ester most readily (10 fold) while cyclic 3’-5’-AMP of 23-amino acids. It is translated as a single chain protein of
was least readily hydrolyzed substrate. The PDE-1 up to 4.0 828-amino acid and subsequent cleavage leads to form a
mg/Kg i.p. was not lethal in mice. The PDE-1 exhibited an protein with two-chains held together through disulfide link-
anticoagulant effect whereas the crude venom showed strong ages. Enzyme under reducing environment behaved as a het-
coagulant effect [49]. erodimeric protein quite differently as compared to other real
heterodimers. It is the first snake venom PDE with con-
firmed and well established primary structure. The VLPDE
2.6. PDE I from Walterinnesia aegyptia Venom
with a molecular mass of 120 kDa, hydrolyses only ADP,
Al-Saleh et al purified PDE-I from Walterinnesia aegyp- but not ATP and 5’AMP and induction of aggregation of
tia venom in 2011. It has a molecular mass of 158 kD. It is platelets by collagen or ADP is inhibited by VLPDE dose
single chain glycoprotein. The enzyme was free of alkaline dependently [31].
phosphatase and 5'-nucleotidase activities. Its optimum pH is
9.0 and optimum temperature is 60°C. Non-competitive in- 2.10. Nn-PDEII from Naja nigricollis Snake Venom
hibitor is cysteine with Ki = 6.2 × 10-3 M and an IC50 of 2.6
mM and competitive inhibitor is adenosine diphosphate. Ibrahim et al. carried a study in 2016 and reported that
Zinc, o-phenanthroline, Glutathione and EDTA inhibited Phosphodiesterase (PDE) enzymatic activity was screened in
PDE-I activity whereas Mg2+ presence potentiated the activ- four Egyptian snake venoms belonging to families Elapidae
ity slightly. thymidine-5'-monophosphate p-nitrophenyl ester and Viperadae and a highly active enzyme (Nn-PDEII), from
was most readily hydrolysed by, whereas cyclic 3'-5'-AMP the richest snake venom species Naja nigricollis. It was puri-
was least susceptible to hydrolysis by PDE-I. In mice PDE-I fied in a set of immunological, biochemical and biological
at a dose of 4.0 mg/kg was not found to be lethal but on hu- assays. Purification was followed in two successive steps
man plasma it exhibited an anticoagulant effect. It is clear including gel filtration and ion exchange chromatography.
from these findings that PDE-I from W. aegyptia shares The enzyme exists as a dimer with a disulphide bridges be-
various features with this enzyme isolated from other differ- tween the two subunits. The enzyme showed its optimum
ent snakes’ venom [45]. activity at 60ºC and pH 8. As it is best stable in alkaline me-
dium (pH 8-9) at 40ºC up to 1 h, however, it loses ~50%
activity markedly increased by Co+2, Mn+2 and Mg2+, in-
2.7. TS-PDE from Trimeresurus stejnegeri Snake Venom
creased to a lesser extent by Ni2+, K+, Ca2+, Ba2+, and Na+ but
Lili et al. isolated and partially characterized a novel not significantly affected by Zn2+ ions and iodoacetic acid.
PDE, named TS-PDE, from T. stejnegeri venom. It is a gly- Al3+ and Cu2+ ions, PMSF, DTT, EDTA, O-phenanthroline
coprotein with 2.48% carbohydrates. It is heterodimer with and L-cysteine exhibited obvious inhibitory effects. Nn-
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