FSSP FAMILIES OF STRUCTURALLY SIMILAR PROTEINS, VERSION 1.

0 (Apr 1 1995)
CREATED Wed Oct 10 20:37:13 BST 2007 for dali on s030-033.ebi.ac.uk
METHOD Dali ver. 2.0: Holm, L., Sander, C. (1993) J.Mol.Biol. 233,123-138
DATABASE 9616 protein chains
PDBID 9185-A
HEADER
COMPND
SOURCE
AUTHOR
SEQLENGTH 110
NALIGN 38
WARNING pairs with Z<2.0 are structurally dissimilar

## SUMMARY: PDB/chain identifiers and structural alignment statistics

NR. STRID1 STRID2 Z RMSD LALI LSEQ2 %IDE REVERS PERMUT NFRAG TOPO PROTEIN
1: 9185-A 1a75-A 14.0 2.2 105 106 51 0 0 2 S CALCIUM BINDING PROTEIN parvalbumin (merlangius merla
2: 9185-A 1cll 7.0 2.4 68 144 26 0 0 2S
3: 9185-A 1ncx 6.7 2.4 68 162 34 0 0 4S
4: 9185-A 2pmy-A 6.2 2.9 66 73 23 0 0 2 S STRUCTURAL GENOMICS, UNKNOWN FUNCTION ras and ef-
hand
5: 9185-A 1wdc-B 5.8 2.3 66 142 18 0 0 5 S MUSCLE PROTEIN scallop myosin fragment scallop myosin
6: 9185-A 1aui-B 5.6 2.4 61 165 31 0 0 3 S HYDROLASE serine THREONINE PHOSPHATASE 2B
(calcineurin)

## FOOTER
References: L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.

Parameters elastic similarity score, threshold 0.20; sequential alignment

The following notation is used for data columns:

STRID1/STRID2 PDB identifiers of search structure and aligned structure with
chain identifier
Z Z-score, i.e., strength of structural similarity in standard
deviations above expexted. The matched structures are sorted
by Z-score. Only matches above a threshold of Z=2 are reported.
RMSD positional root mean square deviation of superimposed CA atoms
in Angstroms
LALI total number of equivalenced residues
LSEQ2 length of the entire chain of the equivalenced structure
%IDE percentage of sequence identity over equivalenced positions
REVERS number of fragments matching in reversed chain direction
PERMUT number of topological permutations (loop reconnections between
query and matched structure)
NFRAG total number of equivalenced fragments
TOPO 'S' sequential connectivity of equivalenced fragments
'N' non-sequential alignment
PROTEIN COMPND record from the PDB file of the aligned structure
SeqNo, PDBNo, AA, STRUCTURE, BP1, BP2, ACC
sequential and PDB residue numbers, amino acid (lower case =
Cys),secondary structure, solvent exposure as in DSSP (Kabsch
and Sander, Biopolymers 22, 2577-2637, 1983). The alignments
block shows the amino acid sequence and DSSP code (in lower
case) of the equivalenced fragments.
OCC number of equivalences spanning this position
STRID1 <=> STRID2
sequential residue numbers of equivalenced fragments (PDB
residue numbers in parentheses); any topological permutations
and matches in reverse chain direction are flagged