Influenza virus resources

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Influenza Virus Resource: information, search and analysis

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Influenza Virus Sequence Database

Protein or nucleotide sequences can be retrieved from the database using GenBank accession numbers or search terms. Multiple queries can be built by clicking the "Add Query" button every time a new query is made, and queries in any combination from the Query Builder can be selected to get sequences in the database. Sequences can be downloaded, and it is possible to analyze them using the multiple sequence alignment or tree building tool integrated to the database. Get sequences by accession Upload
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Enter a comma or space separated list of sequence accessions or upload text file with this list.

Protein Protein coding region Nucleotide

Search for keyword:Keyword Perth Define search set:

Search in strain name

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Influenza virus resources

Type any A B C

Human Leopard Mink Muskrat Host

Sequences length Collection date Min.: From: 2009 Max.: Full-length only To:
2009
Year Month Day

Release dat

Year

Mont

Additional filters:
Country/Region

/ show

any Northern temperate Southern temperate Tropical

Protein

HA NP NA M1

3 4 5 6

any 1 2 3

Subtype

mixed

Required segments: PB2 Month

Include Include

Select all PB1-F2 PA

Full-length only HA NP NA M1 M2 NS1 NS2

PB1 Day

Collection date must contain: Get sequences from:

Pandemic (H1N1) viruses The FLU project

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Influenza virus resources

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Lab strains Vaccine strains Lineage defining strains

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Query builder
Type
X

Host

Country or region

Protein

Subtype

Length

Full-length only

Collection date

Release date

Additional filters

Sele A
Include Include Exclude Include Include

Human

any

HA

H3N2

any

any

any

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 1960 1970 any

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 1971 1980 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 1981 1990 any

Exclude Include Include

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Influenza virus resources

Get sequences from:

Include Include Exclude Include Include

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 1991 2000 any

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2001 2011 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 1995 1995 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 1991 1995 any

Exclude Include Include

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Influenza virus resources

Get sequences from:

Include Include Exclude Include Include

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 1996 2000 any

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2001 2005 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2001 2003 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2004 2007 any

Exclude Include Include

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Influenza virus resources

Get sequences from:

Include Include Exclude Include Include

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2004 2006 any

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2004 2005 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any any any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2010 2010 any

Exclude Include Include

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Influenza virus resources

Get sequences from:

Include Include Exclude Include Include

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2009 2009 any

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2009 2009 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains Human any HA H3N2 any 2009 2009 any

Exclude Include Include

A
Include Include

Get sequences from:

Pandemic (H1N1) viruses The FLU project Lab strains Vaccine strains Lineage defining strains

Exclude Include Include

Show results

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Protein (FASTA)

Influenza virus resources

Defline

ClearReset >{accession} {strain} {year}/{month}/{day} {segname} Click to insert: Gi Accession Host Segment name Serotype Segment number Country Year Month Day Strain Virus name Definition Age G

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