Referencing in LaTex

Recall the following method of referencing

Rolando V. Raqueo

Thursday, December 27, 2012

Making references in LaTeX (fish.tex)

\documentclass{article} \begin{document} \emph{My mother} is a \underline{fish} \cite{WF}. \begin{thebibliography}{99} \bibitem{WF} William Falkner, \emph{As I Lay Dying} \end{thebibliography} \end{document} 2 Rolando V. Raqueo Thursday, December 27, 2012

Need to compile the document twice

Because we are using symbolic references, e.g., \cite{WF},
a second pass is necessary

The second pass will resolve references

Rolando V. Raqueo

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Problem with this method

User is burdened with deciding how to format article titles, journal names, proceeding references Difficult to reuse references in other documents

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Quick BibTex Tutorial

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BibTex Tutorial
Why do you want to learn BibTex? Nuts and Bolts of BibTex Examples

Rolando V. Raqueo

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Why you want to learn BibTex

Complements LaTeX documents by managing bibliography and references Minimizes the drudgery of formatting, numbering, and referencing Disadvantage:
Steep Learning Curve

Rolando V. Raqueo

Thursday, December 27, 2012

The BibTex Process

1. Create a BibTex file with Rerefence entries 2. Get a *.bst file (bibliographic style file) 3. Compile or Build your LaTeX document to create an *.aux file 4. Run BibTeX on your LaTeX file 5. Run LaTeX twice on your updated file 6. View the dvi or pdf file

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Thursday, December 27, 2012

Types of Documents BibTex can handle

ARTICLE BOOK BOOKLET INBOOK INCOLLECTION INPROCEEDINGS MANUAL MISC PHDTHESIS PROCEEDINGS TECHREPORT UNPUBLISHED

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address author booktitle chapter crossref edition editor howpublished institution journal key language

Each Document type can have the following entries

month note number organization pages publisher school series title type=Ph.D. dissertation volume year
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Sample BibTex Book Entry (mybib.bib)

@BOOK{Press, author="W.H. Press", title="Numerical Recipes in C: The Art of Scientific Computing", publisher="Cambridge University Press", year=1992, }
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Sample BibTex Technical Report Entry

@TECHREPORT{Berk, author="Lex A. Berk and L.S. Bernstein and D.C. Robertson", title="MODTRAN: a moderate resolution model for LOWTRAN 7", number="GL-TR-89-0122", institution="Spectral Science", address = "Burlington, MA", year = 1989 } 13
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Sample BibTex Ph.D. Dissertation Entry

@PHDTHESIS{Kuo, author="Jan-Tai Kuo", title="The Influence of Hydrodynamic Transport on Phytoplankton Dynamics in Homogeneous Lakes", school="Cornell University", address="Ithaca, NY", year=1981, } 14 Rolando V. Raqueo Thursday, December 27, 2012

Sample BibTex Masters Thesis Entry

@MASTERSTHESIS{Knobelspiesse, author="Kirk D. Knobelspiesse", title="Atmospheric Compensation for SeaWIFS Images of Lake Superior Utilizing Spatial Information", school="Rochester Institute of Technology", addess="Rochester, NY", month=Sep, year=2000, }
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Sample BibTex Article Entry

@ARTICLE{Vodacek, author="Anthony Vodacek and F.E. Hoge and R.N. Swift and J.K. Yungel and E.T. Peltzer and N.V. Blough", title="The use of in situ and airborne fluorescence measurements to determine UV absorption coefficients and DOC concentrations in surface waters", journal="Limnology and Oceanography", volume=40, number=2, year=1995, pages="411--415", 16 } Rolando V. Raqueo Thursday, December 27, 2012

Sample BibTex Booklet Entry

@BOOKLET{Sherwood, author="D.A. Sherwood", title="Phosphorus Loads Entering Long Pond, A Small Embayment of Lake Ontario near Rochester, New York", howpublished="USGS Fact Sheet 128-99", pages=4, month="November", year=1999, }
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Sample BibTex Proceedings Entry

@INPROCEEDINGS{Stoermer, author="E.F. Stoermer", title="Nearshore phytoplankton populations in the Grand Haven, Michigan vicinity during thermal bar conditions", booktitle="Proceedings of the 11th Conference on Great Lakes Research", pages="137--150", year=1968, }
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Sample BibTex Manual Entry

@MANUAL{RSI, author="RSI", title="ENVI User's Guide", publisher="Reasearch Systems Incorporated", organization="Research Systems Incorporated", howpublished="PDF File", address="Boulder, CO", month="September", year=2001, }
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Different Formatting Styles

To invoke a particular style, go to
http://www.ctan.org

Document styles are defined in *.sty files

mla.sty bmsplain.sty

Bibliography styles are defined in *.bst files

mla.bst amsplain.bst

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To invoke these styles in your document

Copy them to your current working directory with your LaTeX and BibTex document Edit your LaTeX file to appropriately reference these style guides

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Sample LaTeX document listing Bibliography in MLA Style (bib.tex)

\documentclass{report} \usepackage{mla} \begin{document}
\bibliographystyle{mla} \bibliography{mybib} \nocite{*} \end{document}
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Commands to Build and View Document

To use xdvi viewer
% % % % % latex bib.tex bibtex bib.aux latex bib.tex latex bib.tex xdvi bib.dvi

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Sample LaTeX document listing Bibliography in AMS Style (bib.tex)

\documentclass{report} \begin{document} \bibliographystyle{amsplain} \bibliography{mybib} \nocite{*}
\end{document}
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To include only cited articles we remove the \nocite{*} command

\documentclass{report} \begin{document} We want to get the documents \cite{RSI} and \cite{Kuo} for our collection \bibliographystyle{amsplain} \bibliography{mybib} \end{document}
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Cross-referencing in Proceedings
@PROCEEDINGS{Narayanan, editor="Ram Mohan Narayanan and James E. Kalshoven, Jr.", title="Advances in Laser Remote Sensing for Terrestrial and Oceanographic Applications", booktitle="Proceeding of SPIE", publisher="SPIE", volume=3059, year=1997, }
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Article in Proceedings
@INPROCEEDINGS{Ulrich, author="B.L. Ulrich and P. Lacovara and S.E. Moran and M.J. DeWeert", title="Recent results in imaging lidar", crossref="Narayanan", pages="95--108", }

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Miscellaneous LaTeX Topics

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Comments in LaTeX

%
Ignores the rest of the line

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To protect special characters

Use the \ character
e.g.

My\_Cat.raw To typeset a section as typed \begin{verbatim} \end{verbatim}

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Verbatim command
OK for small sections that can be typed into document What about including entire source code of programs
Use verbatim package

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Thursday, December 27, 2012

Including Source code in LaTeX documents

\documentclass{article} \usepackage{verbatim} \begin{document} \begin{equation} \label{E:sum} s = \sum_{i=1}^{n}x_{i} \end{equation} The code as implemented in idl in vectorized form looks like \verbatiminput{sum.pro} \end{document}
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Including image graphics into you LaTeX document

Need to convert your image graphics into EPS For images, use pnmtops, e.g.
% pnmtops norotate nosetpage MyCat.pgm > MyCat.ps

-norotate keeps from auto-rotating the image

-nosetpage keeps from setting to a specific device

Need to include an extension package to LaTeX called graphics using command

\usepackage{graphics}

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Thursday, December 27, 2012

Image Graphics Example (image.tex)

\documentclass{article} \usepackage{graphics} \begin{document} \begin{figure} \includegraphics{MyCat.ps} \caption{This is My Cat} \label{F:MyCat} \end{figure} \end{document}
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Flowchart Figures
Create Flowchart in PowerPoint Export as a bmp file Convert from bmp to postscript
% bmptoppm figure.bmp | pnmtops norotate nosetpage > figure.ps

OR User xfig because it will export to EPS Shareware utility called WMF2EPS
Windows clipboard objects to EPS

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Thursday, December 27, 2012

Because current pdflatex cannot include Encapsulated Postscript Files (EPS)

Need to go from dvi to postscript to pdf using the following commands
% dvips image.dvi % ps2pdf image.ps

Some degradation in quality is observed

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