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Background
What is a telomere?
Why do we have them?
How do they get there?
What do they do?
Why do you care?
What is a telomere?
5-8 bp G-rich tandem repeats
Repetitive noncoding DNA
http://www.phoenixbiomolecular.com/regenerative_medicine.html
http://www.phoenixbiomolecular.com/regenerative_medicine.html
Genetic Clock
Crisis
Genomic Instability
Genetic Clock
immortalization
Summary
Replication Problem
Evolutionary development of telomere
Prevent Oncogenesis
Curr Opin Cell Biol. 2006 Jun;18(3):247-53.
Structure: D-loop-T-loop
G-quadruplex (G4)
G-Tetrad
http://www.nature.com/embor/journal/v7/n4/images/7400661-f1.jpg
Diverse telomere-capping
strategies
Budding Yeast
Stn1 and Ten1 bind Cdc13
Unknown biochemical
function of stn1 and ten1
OB fold
Bind oligonucleotides
or oligosaccarides
No significant amino
acid sequence
similarity between OB
fold proteins
Notorious for absence of
primary sequence features
that can be used to predict
the domain.
Notable sequence
conservation
OB-fold domain
of Rpa2
OB fold
Notorious for absence of
primary sequence
DNA
Binding
Domain
Notable sequence
conservation
OB-fold domain of Rpa2
RPA (Replication protein A)
Heterotrimer
RPA2,RPA3,& RPA1
Core component of DNA
replication repair and
recombination
Binds ssDNA stabilizing
unwound DNA and
facilitates assembly of the
complex through protein
protein interactions
Domain Swap
Essential function of
RPA2
Restored by OB fold
of Stn1
Further evidence Nterm of Stn1
contains an OB fold
Perhaps an
evolutionary
relationship
between Stn1 and
Rpa2
Domain Swap
Summary
Cdc13, Stn1 and Ten1 form RPA-like
complex that binds telomeres
Rpa 2 & Rpa3 have specificity for
telomeric DNA
3
2
1
Discussion Points
Reverse chimera Stn1-OBRPA2 didnt work
Ten1 OB fold? Rosetta?
Oligomerization domain
Cooperatively?
G4 binding
Affinity? Is it too much to ask?
THEND
Sup 1
SUP 2
Sup 3