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Dr.Mahr-un -nisa
Proteins-----AA
Proteins are made from 20 different amino acids,
9 of which are essential.
Each amino acid has an amino group, an acid
group, a hydrogen atom, and a side group.
It is the side group that makes each amino acid
unique.
The sequence of amino acids in each protein
determines its unique shape and function.
Amino Acids
Have unique side groups that result in
differences in the size, shape and electrical
charge of an amino acid
Nonessential amino acids, also called
dispensable amino acids, are ones the
body can create.
Nonessential amino acids include alanine,
arginine, asparagines, aspartic acid, cysteine,
glutamic acid, glutamine, glycine, proline,
serine, and tyrosine.
Amino Acids
Essential amino acids, also called indispensable
amino acids, must be supplied by the foods people
consume.
Essential amino acids include histidine, isoleucine,
leucine, lysine, methionine, phenyalanine, threonine,
tryptophan, and valine.
Conditionally essential amino acids refer to amino
acids that are normally nonessential but essential
under certain conditions.
Amino Acid Requirements of Humans
--------------------------------------------------------------------
Nutritionally Essential Nutritionally Nonessential
--------------------------------------------------------------------
Argininea Alanine
Histidine Asparagine
Isoleucine Aspartate
Leucine Cysteine
Lysine Glutamate
Methionine Glutamine
Phenylalanine Glycine
Threonine Proline
Tryptophan Serine
Valine Tyrosine
---------------------------------------------------------------------
a
Nutritionally semiessential. Synthesized at rates
inadequate to support growth of children.
What is protein
Proteins
Amino acid chains are linked by peptide bonds in
condensation reactions.
Dipeptides have two amino acids bonded together.
Tripeptides have three amino acids bonded together.
Polypeptides have more than two amino acids bonded
together.
Amino acid sequences are all different, which
allows for a wide variety of possible sequences.
Peptide bond
M. Zaharna Clini.
Chem. 2009
The Chemists View of Proteins
Proteins
Protein Shapes
Hydrophilic side groups are attracted to water.
Hydrophobic side groups repel water.
Coiled and twisted chains help to provide
stability.
Classification of protein
Proteins are polymers of amino acids produced
by living cells in all forms of life.
A large number of proteins exist with diverse
functions, sizes, shapes and structures but each
is composed of essential and non-essential
amino acids in varying numbers and sequences.
The number of distinct proteins within one cell is
estimated at 3,000 - 5,000
The most abundant organic molecule in cells (50-70%
of cell dry weight)
M. Zaharna Clini.
Chem. 2009
Size
A typical protein contains 200-300
amino acids, but some are much
smaller and some are much larger
Proteins range in molecular weight from
6,000 Daltons (insulin) to millions of
Daltons (structural proteins)
M. Zaharna Clini.
Chem. 2009
Protein Structure
Primary structure
sequence of AA
In order to function properly,
proteins must have the correct
sequence of amino acids.
e.g when valine is substituted
for glutamic acid in the chain
of HbA, HbS is formed, which
results in sickle-cell anemia.
M. Zaharna Clini.
Chem. 2009
Secondary structure
Initial helical folding
Beta pleated sheet
Held together by
Hydrogen bonding
M. Zaharna Clini.
Chem. 2009
Tertiary Structure
Chain folds back on itself
to form 3D structure
Interaction of R groups
Responsible for biologic
activity of molecule
M. Zaharna Clini.
Chem. 2009
Classification by Protein
Structure
Conjugated proteins contain non-amino
acid groups
Amino acid portion is called apoprotein and
non-amino acid portion is called the
prosthetic group
It is the prothetic groups that define the
characteristics of these proteins.
Name of the conjugated protein is derived
from the prosthetic group
M. Zaharna Clini.
Chem. 2009
Conjugated Proteins
Antibodies
Acute phase proteins
Proteins associated with inflammation
Transport proteins( albumin, transferrin)
Proteins used to bind and transport
Hemostasis
Proteins involved in forming clots and acting very closely with
complement
M. Zaharna Clini.
Chem. 2009
Functions of proteins
Regulatory
( receptors, hormones )
Catalysis,
enzymes
Osmotic force
Maintenance of water distribution between cells
and tissue and the vascular system of the body
Acid-base balance
Participation as buffers to maintain pH
Structural, contractile, fibrous and keratinous
M. Zaharna Clini.
Chem. 2009
Monogastric Protein Digestion
Whole proteins are not absorbed
Too large to pass through cell membranes
intact H O
H3N+ C C
H O
R
Digestive enzymes N
H
C
R
C
H O
Dipeptidases
Cleave dipeptides
ENVIRONMENT
ORGANISM
Bio-
Ingested synthesis Protein
protein
2 3
1
a
AMINO
ACIDS
b
c c Purines
Degradatio Pyrimidines
n Porphyrins
(required)
Carbon
Nitrogen
skeletons
(ketogenic) (glucogenic)
Urea Used for
energy pyruvate
acetoacetate -ketoglutarate
acetyl CoA succinyl-CoA
fumarate
oxaloacetate
Amino Acid Catabolism
Deamination of Amino Acids
removal of the a-amino acids
Oxidative Deamination
Non-oxidative Deamination
Transamination
TRANSAMINATION
The term amphibolic is used to describe a biochemical
pathway that involves both catabolism and anabolism
Reductive amination catalyzed by
glutamate dehydrogenase (this is physiological important
becouse high conc. Of NH4 ion are cytotoxic)
Glutamine synthesis is coupled to
hydrolysis of ATP
Pyruvate is an amphibolic intermediate
in synthesis of alanine
Glutamte dehydrogenase, glutamine synthetase and
aminotranferases play central roles in amino acid
biostynthsis
O C
H2 H2
Cysteine is CH C C S CH3
not +NH3
nutritionally
essential,
however it
is derived
from
methionine
Tyrosine is
formed
from
phenylalanine
Hydroxyproline is formed after protein
synthesis
Selenocysteine is synthesized from serine
and selenophosphate
Amino acids that are synthesized de novo in humans.
All are related by a small number of steps to glycolysis
or TCA cycle intermediates.
Salvage pathways for formation of certain
nonessential amino acids from other amino acids
Arginine Proline
Cysteine Methionine
Tyrosine Phenylalanine
NITROGEN BALANCE
mitochondria
cytosol
Liver 23 21
Gut 45 39
Muscle 5 2
Ks = fraction of tissue protein synthesized per
day
Protein synthesis
On-going, semicontinuous activity in all cells
but rate varies greatly between tissues
Rate is regulated by hormones and supply of
amino acids and energy
Energetically expensive
requires about 5 ATP per one peptide bond
Accounts for about 20% of whole-body
energy expenditure
Protein degradation
Also controlled by hormones and energy
status
Method to assist in metabolic control
turns off enzymes
Protein synthesis and
degradation
Synthesis must exceed degradation for
net protein deposition or secretion
Changes in deposition can be achieved
by different combinations of changes in
synthesis and degradation
Changes in deposition
Synthesis Degradation Deposition
No change
No change
No change
Protein synthesis and
degradation
Synthesis must exceed degradation for
net protein deposition or secretion
Changes in deposition can be achieved
by different combinations of changes in
synthesis and degradation
Allows for fine control of protein
deposition
Proline biosynthesis(the initial reaction of proline biosynthsis converts the
-carboxyl group of glutamate to the mixed acid anhydride of glutamate -phospate.
Subsequent reduction form glutamate - semialdehyde,, which following
spontaneously cyclization is reduced to L-Proline )
Protein synthesis and
degradation
Other possible reasons for evolution of
protein turnover include
Allows post-translational conversion of
inactive peptides to active forms (e.g.,
pepsinogen to pepsin)
Minimizes possible negative consequences
of translation errors
Protein catabolism
Some net catabolism of body proteins
occurs at all times
Expressed as urinary nitrogen excretion
yields urea
Minimal nitrogen excretion is termed
endogenous urinary nitrogen (EUN)
Urinary nitrogen excretion
LIVER
Amino acids keto acids
NH3
CO2
Urea
Blood
KIDNEY Urea
Urine
Protein Synthesis
Protein Synthesis
Synthesis= the process of building or
making
DNA= (deoxyribonucleic acid) the
genetic code or instructions for the cell
RNA= ribonucleic acid
Amino Acids= building blocks of
proteins
DNA RNA
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STEP 2-TRANSLATION-
Assembling proteins- in the
cytoplasm
mRNA leaves nucleus and enters cytoplasm
tRNA molecules with the complementary
anticodon and a specific amino acid arrives at
the ribosome where the mRNA is waiting.
Peptide bond forms between amino acids
tRNA molecule leaves and a new one comes
with another amino acid.
Amino acids continue to attach together until
the stop codon and a protein is formed
SUMMARY
Transcription= process of making RNA
from DNA
Translation= RNA directions are used to
make a protein from amino acids
DNARNA Protein
Transcription Translation
Cytoplasm on
nucleus
ribosome
DNA RNA
http://stemcells.nih.go
v/info/scireport/image
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Ruminant Protein Digestion
Ruminants can exist with limited dietary
protein sources due to microbial protein
synthesis
Essential amino acids synthesized
Microbial protein is not sufficient during:
Rapid growth
High production
Protein in the Ruminant Diet
Types of protein:
Dietary protein contains amino acids
Rumen Degradable Protein (RDP) available for use by
rumen microbes
Rumen Undegradable Protein (RUP) escapes rumen
fermentation; enters small intestine unaltered
Varies with diet, feed processing
Dietary non-protein nitrogen (NPN) not true
protein; provides a source of nitrogen for
microbial protein synthesis
Relatively CHEAP - decreases cost of protein
supplementation
Ruminant Protein Feeding
Feed the rumen microbes first (RDP)
Two counteractive processes in rumen
Degradation of (dietary) protein
Synthesis of microbial protein
Feed proteins that will escape fermentation to
meet remainder of animals protein requirements
Escape protein, bypass protein, or
rumen undegradable protein (RUP)
Aldehydes increase inter-protein cross-linking
Heat treatment
Utilization depends on
Digestibility of RUP source in the small intestine
Protein quality
Protein Degradation in Rumen
Feedstuff % Degraded
in 2 hours
Urea 100
Alfalfa (fresh) 90
Wheat Grain 78
Soybean Meal 65
Corn Grain 48
Blood Meal 18
Rumen Protein Utilization
Factors affecting ruminal degradation
Rate of passage
Rate of passage degradation
Solubility in water
Must be solubilized prior to degradation
Heat treatment
Degradation
N (and S) availability
Energy availability (carbohydrates)
Protein Fractions
Dietary proteins classified based on
solubility in the rumen
A
NPN, instantly solubilized/degraded
B1 B2 B3
Potentially degradable
C
Insoluble, recovered in ADF, undegradable
Ruminant Protein Digestion
Rumen microbes use dietary protein
Creates difference between protein quality in feed
and protein actually absorbed by host
Microbes break down dietary protein to
Amino acids
NH3, VFAs, and CO2
Microbes re-synthesize amino acids
Including all the essential amino acids from NH3 and
carbon skeletons
Blood NH3
Rumen NH3
Carbon backbone
(from CHO fermentation)
Time post-feeding
Adapted from Van Soest, 1994
Microbial Protein Formation
Dietary Dietary Cellulose
Starch Sugar Hemicellulose
rapid slow
RUP
Feed AA
Protein
Feed RDP
NH3/NH4 NH3
Protein
Feed NPN SMALL INTESTINE
Bacterial N MCP MCP AA
NH4+
Salivary N loss RUMEN
Liver
ATP
Blood Urea
Ruminant Digestion and
Absorption
Post-ruminal digestion and absorption
closely resembles the processes of
monogastric animals
However, amino acid profile entering small
intestine different from dietary profile
Overview of Protein Feeding
Issues in Ruminants
Rumen degradable protein (RDP)
Low protein quality in feed very good quality
microbial proteins
Great protein quality in feed very good quality
microbial proteins
Feed the cheapest RDP source that is practical
regardless of quality
Rumen undegradable protein (RUP)
Not modified in rumen, so should be higher
quality protein as fed to animal
May cost more initially, but may be worth cost if
performance boosted enough
Salivary Urea Recycled urea
NH3 UREA
LIVER
NPN
Dietary
Nitrogen
PEPTIDES NH3 AMINO
LEVEL TO
PROVIDE FOR
ACIDS
AMINO POOL MAXIMUM
ACIDS MICROBIAL GROWTH
AMINO
PROTEIN ACIDS
MICROBIAL
PROTEIN
SMALL
INTESTINE
35% OF PROTEIN
RUP
Reticulo-rumen
Functional Feeds
Functional feeds may be defined as any
feed or feed ingredient that produces a
biological effect or health benefit that is
above and beyond the nutritive value
of that feedstuff
Many feeds and their components fit
this definition
Functional Proteins
Functional proteins are feed-derived
proteins that, in addition to their
nutritional value, produce a biological
effect in the body
Feedstuffs with Biologically Active
Proteins
Milk
Colostrum
Whey Protein Concentrates/Isolates
Plasma or serum
Other animal-derived feedstuffs
Fish meal
Meat and bone meal
Fermented animal-based products
Yeast
Lactobacillus organisms
Soy products
Protein Size Affects Function
Many protein hormones are functional even
when fed to animals
thyrotropin-releasing hormone (TRH, a 3-amino acid
peptide)
luteinizing hormone-releasing hormone (LHRH, a 10-amino
acid peptide)
insulin (a 51-amino acid polypeptide)
The smaller the peptide, the more functional it is
when fed
100% activity for TRH, 50% for LHRH, and 30% for insulin
Feedstuffs containing protein hormones (colostrum)
have biological activity when fed to animals
Production of Bioactive Peptides
From Biologically-Inactive Proteins
Peptides produced from intact inactive
proteins by incomplete digestion via
proteases in stomach and duodenum or via
microbial proteases in rumen
Many of these biologically active peptides
(typically 2-4 amino acid residues) are stable
from further digestion
Some peptides bind to specific epithelial receptors
in intestinal lumen and induce physiological
reactions
Some peptides are absorbed intact by a specific
peptide transporter system into the circulatory
system and transported to target organs
Responses to Feeding Functional
Proteins or Peptides
Antimicrobial including control of gut microflora
Antiviral
Binding of enterotoxins
Anti-carcinogenic
Immunomodulation
Anti-oxidant effects
Opioid effects
Enhance tissue development or function
Anti-inflammatory
Appetite regulation
Anti-hypertensive
Anti-thrombic
Functional Activity of Major Milk Proteins
Caseins (, and )
Transport of minerals and trace elements (Ca, PO4, Fe, Zn, Cu), precursor of
bioactive peptides, immunomodulation (hydrolysates/peptides)
-Lactoglobulin
Retinol carrier, binding fatty acids, potential antioxidant, precursor for
bioactive peptides
-Lactalbumin
Lactose synthesis in mammary gland, Ca carrier, immunomodulation,
anticarcinogenic, precursor for bioactive peptides
Immunoglobulins
Specific immune protection (antibodies and complement system), G, M, A
potential precursor for bioactive peptides
Glycomacropeptide
Antiviral, antithrombotic, bifidogenic, gastric regulation
Lactoferrin
Antimicrobial, antioxidative, anticarcinogenic, anti-inflammatory,
immunomodulation, iron transport, cell growth regulation, precursor for
bioactive peptides
Lactoperoxidase
Antimicrobial, synergistic effect with Igs and LF
Lysozyme
Antimicrobial, synergistic effect with Igs and LF
Serum albumin
Precursor for bioactive peptides
Proteose peptones
Potential mineral carrier
Functional Activity of Minor Milk
Proteins
Growth factors (IgF, TGF, EGF)
stimulation of cell proliferation and differentation
Cytokines
regulation of immune system (interferons,
interleukins, TGF, TNF)
Inflammation
Increases immune response
Milk basic protein (MBP)
Promotion of bone formation and suppression of bone
resorption
Osteopontin
Modulation of trophoblastic cell migration
Protein Fragments That Have
Biological Activity
Functional Protein Effects During
Toxin or Disease Challenge
During intestinal inflammation, some functional proteins:
Reduce
local inflammatory response
excessive activation of inflammatory cells
permeability
Increase
Nutrient absorption
Barrier function
Intestinal health
During intestinal inflammation, some functional proteins:
Are absorbed and create adverse allergenic and immune
responses in the body