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PROTEIN
• linear
• ordered
• 1 dimensional
• sequence of amino acid polymer
• by convention, written from amino end to
carboxyl end
• a perfectly linear amino acid polymer is
neither functional nor energetically
favorable folding!
Secondary Structure
• non-linear
• 3 dimensional
• localized to regions of an amino acid
chain
• formed and stabilized by hydrogen
bonding, electrostatic and van der
Waals interactions
Secondary Structure
Tertiary Structure
• non-linear
• 3 dimensional
Quaternary Structure
• non-linear
• 3 dimensional
3D structure of proteins
TERTIARY STRUCTURE QUATERNARY STRUCTURE
PROTEIN Classification
Protein classification: based on chemical
composition
On the basis of their chemical composition, proteins may be divided into two classes: simple and
complex.
Simple proteins
Conjugated proteins
Sometimes also called heteroproteins, they contain in their
Also known as homoproteins, they are made up of structure a non-protein portion. Three examples are:
only amino acids. Examples are plasma albumin, • Glycoproteins
collagen, and keratin. • Chromoproteins
• Phosphoproteins.
Protein classification: based on shape
On the basis of their shape, proteins may be divided into two classes: fibrous and
globular.
FIBROUS PROTEINS
They have primarily mechanical and structural functions,
• Here are some examples:
providing support to the cells as well as the whole
organism.JBskjDQKDIasklsklals • Fibroin
• Collagen
These proteins are insoluble in water as they contain, • α-Keratins
both internally and on their surface, many hydrophobic
• Elastin
amino acids. The presence on their surface of
hydrophobic amino acids facilitates their packaging into
very complex supramolecular structures.
Protein classification: based on shape
On the basis of their shape, proteins may be divided into two classes: fibrous and
globular.
Globular proteins
Most of the proteins belong to this class. Unlike fibrous proteins, that have structural and
They have a compact and more or less spherical mechanical functions, they act as:
structure, more complex than fibrous proteins. In this • enzymes;
regard, motifs, domains, tertiary and quaternary
• hormones;
structures are found, in addition to the secondary
structures. • membrane transporters and receptors;
• transporters of triglycerides, fatty acids and
They are generally soluble in water but can also be found oxygen in the blood;
inserted into biological membranes (transmembrane • immunoglobulins or antibodies;
proteins), thus in a hydrophobic environment. • grain and legume storage proteins.
Protein classification: based on biological
functions
• Enzymes (biochemical catalysts).
The multitude of functions that proteins perform is the
• Transport proteins
consequence of both the folding of the polypeptide chain,
• Storage proteins
therefore of their three-dimensional structure, and the
• They are involved in nerve transmission.
presence of many different functional groups in the amino
• They control development and differentiation.
acid side chains, such as thiols, alcohols, thioethers, • Hormones
carboxamides, carboxylic acids and different basic groups. • Protection against harmful agents.
• Storage of energy.
Protein Classification based on solubility