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Molecules of Life
Organic Compounds
Hydrogen and other elements covalently bonded to carbon
Carbohydrates Lipids Proteins Nucleic
Acids
Organic Compounds
carbon (C) oxygen (O) hydrogen (H) nitrogen (N) calcium (C) phosphorous (P) potassium (K) iron (S) sodium (Na) chlorine (Cl) magnesium (Mg) iron (Fe)
p.34a
Organic Compounds
ball-and-stick model
space-filling model
p.34b
shell of carbon has 4 electrons; can hold 8 carbon atom can form covalent bonds with up to four atoms
Each
Bonding Arrangements
Carbon
atoms can form chains or rings atoms project from the carbon backbone
Other
Organic Compounds
or
p.34e
Organic Compounds
Functional Groups
Atoms
or clusters of atoms that are covalently bonded to carbon backbone organic compounds their different properties
Give
Types of Reactions
Estrogen and testosterone are hormones responsible for observable differences in traits between male and female wood ducks Differences in position of functional groups attached to ring structure (pg 36)
An Estrogen
Testosterone
Condensation Reactions
Form
Enzymes
remove -OH from one molecule, H from another, form bond between two molecules atoms can join to form water
Discarded
Condensation
Hydrolysis
A
type of cleavage reaction polymers into smaller units split molecules into two or more
Breaks
Enzymes
parts
An
-OH group and an H atom derived from water are attached at exposed sites
Hydrolysis
Carbohydrates
Monosaccharides (simple sugars) Oligosaccharides (short(short-chain carbohydrates) Polysaccharides (complex carbohydrates)
Monosaccharides
Simplest carbohydrates Most are sweet tasting, water soluble Most have 5- or 6-carbon backbone 5- 6Glucose (6 C) Ribose (5 C) Fructose (6 C) Deoxyribose (5 C)
Two Monosaccharides
glucose
fructose
Fig. 3-7, p.38
Disaccharides
Type
glucose
fructose
+ H2O
sucrose
Polysaccharides
Straight Most
or branched chains of many sugar monomers common are composed entirely of glucose
in bonding patterns between monomers - tough, indigestible, structural material in plants - easily digested, storage form in
Cellulose
Starch
plants
y1
Glycogen
Sugar Large
cells
When
Chitin
Polysaccharide Nitrogen-containing Nitrogen-
groups attached to
glucose monomers
Structural
Chitin
Chitin
occurs in protective body coverings of many animals, including ticks (pg 39)
Lipids
Most
Sterols
Fats
Fatty
acid(s)
attached to glycerol
Triglycerides
Fatty Acids
Carboxyl Carbon
Saturated - Single bonds between carbons Unsaturated - One or more double bonds
y3
Phospholipids
Main
components of cell
membranes
Waxes
Long-chain Long-
Important
Waxes
Bees
Rigid
- most
R group
by the R group
Protein Synthesis
Protein
Peptide
Primary Structure
Sequence of amino acids Unique for each protein Two linked amino acids = dipeptide Three or more = polypeptide Backbone of polypeptide has N atoms:
-N -C -C -N -C -C -N -C -C -N one peptide group
Protein Shapes
Fibrous
proteins
Globular
proteins
Allows hydrogen bonds to form between different amino acids along length of chain Puts R groups in positions that allow them to interact
Secondary Structure
Hydrogen
bonds form between different parts of polypeptide chain bonds give rise to coiled or extended pattern or pleated sheet
These
Helix
Tertiary Structure
heme group
Quaternary Structure
Some proteins are made up of more than one polypeptide chain
Hemoglobin
heme
alpha globin
alpha globin
beta globin
beta globin
Fig. 3-17, p.44
Glycoproteins
Denaturation
Disruption Breakage Causes
of denaturation:
pH Temperature
Destroying
function
a Normal amino acid sequence at the start of a beta change for hemoglobin
VALINE
HISTIDINE
GLUTAMATE GLUTAMATE
b One amino acid substitution results in the abnormal beta chain in HbS molecules. During protein synthesis, valine was added instead of glutamate at the sixth position of the growing polypeptide chain.
c Glutamate has an overall negative charge; valine has no net charge. The difference gives rise to a water-repellant, sticky patch on HbS molcules. They stick together because of that patch, forming rod-shaped clumps that distort normally rounded red blood cells into sickle shapes. (A sickle is a farm tool that has a crescentshaped blade.)
sickle cell
normal cell
Clumping of cells in bloodstream Circulatory problems, damage to brain, lungs, heart, skeletal muscles, gut, and kidneys Heart failure, paralysis, pneumonia, rheumatism, gut pain, kidney failure Spleen concentrates sickle cells Spleen enlargement Immune system compromised
Rapid destruction of sickle cells Anemia, causing weakness,fatigue, impaired development,heart chamber dilation Impaired brain function, heart failure
Fig. 3-18d, p.45
Nucleotide Structure
Sugar
Ribose or deoxyribose
At
Base
Nucleotide Functions
Energy
carriers
messengers
acids
ATP - A Nucleotide
base three phosphate groups
sugar
Nucleic Acids
Cytosine Adenine
Composed
DNA
Double-stranded Double Consists
RNA
Usually Four
single strands
types of nucleotides
Unlike Three
DNA, contains the base uracil in place of thymine types are key players in protein synthesis